G308679


Basic Information

Item Value
gene id G308679
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 2547599 ~ 2547864 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU424926
agagctttcagacctcaaataatgcaaagaaaacaagttcatattcataaagttttaagaataaccctggtttttaatcacagtttttttatgcatcttggcatcatgttctcctccaccagtcttacacactgcttttggataactttatgctgctttactcctggtgcaaaaaatcaagcagttcagtttggtggtttgatggtttgtgatcatccatcttcctcttgattatattccag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU424926 True 242 lncRNA 0.36 2 2547599 2547864

Neighbor

gene id symbol gene type direction distance location
eif3m eif3m,LOC107602127,LOC107671036 coding upstream 310716 2221969 ~ 2236883 (+)
cstf3 cstf3,LOC107671440 coding upstream 434615 2076601 ~ 2112984 (+)
LOC103031553 pcyt1a,LOC108440592,LOC108264716,LOC107091881 coding upstream 700015 1834677 ~ 1847584 (+)
LOC103029868 NA coding upstream 756723 1787316 ~ 1790876 (+)
omp omp,ompa,LOC107660685,LOC107735103 coding upstream 797356 1745320 ~ 1750243 (+)
pex16 pex16,LOC107753012,LOC107669959,LOC106593118 coding downstream 446204 2994068 ~ 3009972 (+)
LOC103038331 LOC108433450 coding downstream 471295 3019159 ~ 3035820 (+)
cep126 NA coding downstream 522372 3070236 ~ 3107407 (+)
G308668 NA non-coding upstream 77603 2440889 ~ 2469996 (+)
G308662 NA non-coding upstream 118298 2417911 ~ 2429301 (+)
G308659 NA non-coding upstream 133766 2410677 ~ 2413833 (+)
G308658 NA non-coding upstream 136984 2407912 ~ 2410615 (+)
G308649 NA non-coding upstream 137619 2354127 ~ 2409980 (+)
G308681 NA non-coding downstream 9218 2557082 ~ 2557382 (+)
G308682 NA non-coding downstream 13042 2560906 ~ 2561170 (+)
G308683 NA non-coding downstream 24540 2572404 ~ 2572789 (+)
G308685 NA non-coding downstream 51459 2599323 ~ 2599554 (+)
G308712 NA non-coding downstream 64874 2612738 ~ 2612952 (+)
G308643 kifc3 other upstream 209433 2319891 ~ 2338166 (+)
G308535 depdc7,LOC107758055,LOC107576633 other upstream 403636 2131079 ~ 2143963 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other upstream 527468 2017464 ~ 2020131 (+)
serp1 NA other upstream 714925 1827904 ~ 1832674 (+)
G308090 NA other upstream 2361524 185337 ~ 186075 (+)
G308680 NA other downstream 8463 2556327 ~ 2556569 (+)

Expression


Co-expression Network