relt (relt)


Basic Information

Item Value
gene id relt
gene name relt
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 1084433 ~ 1155289 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665977.1
TTTGGATGACAAAGAGGCGCTGAGCTGCCGGGCCGAGTACCGCTGCCTTTACGGCTGATTACCGGCGATTACCGGCTCCCCTTACCGCCCCCACCGCCTCTAACTACCGCCCGCAGAGCCGCCCGGTCCCTCACCGCCTCCACACACTCACCAGatcATATGTTTATAGAAGAATTTATAGAAGATGATGAGGAACCACCTCTGCTGCTCCGCCCCCGTCCTCCTGATGctgCTGGGTCCATTGGGGGCGTTGGCTGGACCATGCCAGTGgggagaggagtgtgtgtgtctgcattgtcctgctggaaaggAGCCAACTACGGCCTGCAGTGAGGTGGAGGGTCCTGACGTGGTGGTGAAATGCCGCCGCTGCCCCCTCGGCACTTTCTCGGACGCCGACGGCCCGGATCAGTGCCGCCCAATCACGGCCTGCAGGAGCCTGAACCGATGGACTGTGACTCCGCCTACCTCACACTCTGACGCCAAGTGTGGATCCTGCCTGCCTGgATTTCACCCTGCAGCTCAGCAGAAGGACTCTGCCCTGCGCTCCTGTGTGAAAACATCTCTGAAGCGGCTGAAGCGTAACGCGGGTAAGAGCGCCCCCCACGGGTCTGGAGTGGGTGTTGCGAACGCCACTAACGTGCACAGCCCGGAGGAGAAGAACACGGAGTACGCGGTGTTCGCTCTGGTGCCCATCTTCTGCGTGATGGGGCTGCTGGGTATCCTCATCTGTAACCTGCTGAAGAAGAAAGGCATCCACTGCACTGCAGAGAAAGAGGCCGGAGACGAGGAGGCAGCCATGCCTCAGAAAGAAGgtaACCCTTGCCCCTACATTGTAGAAGATCCTAATGAAGACACTATCAGTGTGCTGGTACGACTCATCACAGAAAAGAAAGaaaATGCTGCTGCTTTGGAAGAGTTATTAATGGAAtatgagagaaagcagatggcCGTCAGCAAAGCCTCATCCATCAAGTTCCCTGTTCTCCCTCATTTGGCTCAGTTCCGCTCTCTCCCCAGGCTCTGTACCCACCAGCATCATCTCCACACTATAAACGGCCTGGCTCCTCGCTCTGGGCTCTGCTGTTCCCGCTGCAGTCAGAAGAAGTGGCCCGAGCTGCTGCTGCCCCCACTGACCCTAACCAACGACCTCCAGAAAACCCCCTGCAACCAAACCAAGCCCCCCACACCTACCGAGGGAACCATCCTCTCTGTGGGAAGGTTCCAGGTGGCTCAGATCCAGGAGGGGAATCCGGTGTCTGTGACGTCGACGCCGGTGGAGTCCAGTGACACGGACTCAGTGGAGTCGGGCCACACCGAGCCGGCAGAAGAGAGGTCACTGCTGGGCCTGTCCGTTTCCTCCCACTCCGCCTCCTCCAAGTCCAGACAGGAGatgtctGAGTGAGAGGATGGAAGAAAGACAGATGaagaacgaaagagagagagagagagagagagagcctcaCCGTCTGAAGGATGACATGACGTGGTCTCTGAGGCTGTGCAGAGGAAGAGTCTGGGCTGAAGCAGGGCGTTATCAGGACTCACCCCCATGGGGAGTTAAGAGTTCACCTCAAATTCCACATCAGAAGAGGAATCGGTATTTATTACGGACTCAATGCAGCTATTTTATTACAGGAAAGCTATTTGCTTCAGGCCTtgccagagaaagagagagagagagcgagggagtgaACGAGGGGCCGGTGTGAGACCACTGTGGGCTTTTTGTGCTTccggaaaaagaaaaaagaaaaaacactacaGAAGAGTCTGGATGAGGGAAAAACCTCACTGCTCAATACGGTCCAACAGTACCACTGCTTCCACAAGACCCAGCATGAGAACCAGAgattatatacacagtacacactcaaatatatatagatCATTTGTATTGATCAGGTTTAATTGTGATTTTGGGATCCTGGGAAATGTAGTCTAATATTTAAAGCTCCTTTAAACTGTGTACAGTATTcagaattttaaaacaaatccaCTTTTAAAAGCTAAATTCAGGGCAGCAGTGAAGGAAATCTCTTTATATACTGTTTTTGAATGTAATATTAGAATACAGcgcctttattttttacttttaattctaTAAATCCACAGTATATCACACTCACAGGCGCAGACAGATCAGACAGGGTTCATAACTCCAGCTTTTTGGAATGGCTCTCCGTATTTACAGCAGCTtccttactattattattattattattattactatcctGCCTCAAACAGGTCTGGCACATTTTGATGATGCTTTAGAAAAGAGAAACGTTCTGTAAATATGTACAGCGTAgtatgtaaagaaaacaaaaggtgAAAAAGATggtattttttaacaatatgtATTAAAGCTCTTTTCTTGTACAGACACACTGCAGGCCACCTTAAAATGATGCAGTAACTCATTGCCTCTAATGGGTTTAGTCAACATTTCTCAtaatttaccgtatttttcgcactataaagtgcaccagattagaaagcgcattatgcgacactagtaaggaacaggggtgtcgccgtGTCTTCCTTCTAATTCGGCta

Function

symbol description
relt Predicted to be involved in apoptotic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in Kupffer's vesicle and axis. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 3C. Orthologous to human RELT (RELT TNF receptor).

NR:

description
PREDICTED: tumor necrosis factor receptor superfamily member 19L isoform X1

GO: NA

KEGG:

id description
K05156 TNFRSF19L, RELT; tumor necrosis factor receptor superfamily member 19-like

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665977.1 True 2559 mRNA 0.50 11 1084433 1155289

Neighbor

gene id symbol gene type direction distance location
arhgef17 si:ch211-248g20.5,arhgef17,LOC107660677,LOC107658857 coding upstream 11910 894860 ~ 1072523 (+)
p2ry6 p2ry6,LOC107705774,LOC107601092,LOC107660676,LOC107735228 coding upstream 197142 859048 ~ 887291 (+)
fam168a fam168a,LOC107600264,LOC107594362,LOC108264593,LOC107705757 coding upstream 242746 783475 ~ 841687 (+)
LOC103036410 fchsd2,LOC107705784,LOC107594367,LOC107600282 coding downstream 24268 1179557 ~ 1333842 (+)
LOC103036707 NA coding downstream 185178 1340467 ~ 1352751 (+)
rps3 rps3,LOC102795110 coding downstream 198473 1353762 ~ 1361925 (+)
kctd14 kctd14 coding downstream 208425 1363714 ~ 1366089 (+)
ints4 ints4 coding downstream 222317 1377606 ~ 1401271 (+)
G308223 NA non-coding upstream 70206 1012427 ~ 1014227 (+)
G308222 NA non-coding upstream 92800 991095 ~ 991633 (+)
G308218 NA non-coding upstream 127666 953501 ~ 956767 (+)
G308215 NA non-coding upstream 142501 941167 ~ 941932 (+)
G308187 NA non-coding upstream 161215 792844 ~ 923218 (+)
G308307 NA non-coding downstream 40287 1195576 ~ 1225465 (+)
G308312 NA non-coding downstream 70916 1226205 ~ 1226823 (+)
G308317 NA non-coding downstream 107850 1263139 ~ 1264020 (+)
G308322 NA non-coding downstream 127548 1282837 ~ 1283773 (+)
G308324 NA non-coding downstream 182099 1337388 ~ 1338341 (+)
G308090 NA other upstream 898358 185337 ~ 186075 (+)
serp1 NA other downstream 672615 1827904 ~ 1832674 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other downstream 862175 2017464 ~ 2020131 (+)
G308535 depdc7,LOC107758055,LOC107576633 other downstream 975790 2131079 ~ 2143963 (+)
G308643 kifc3 other downstream 1164602 2319891 ~ 2338166 (+)
G308680 NA other downstream 1401038 2556327 ~ 2556569 (+)

Expression


Co-expression Network