eif3m (eif3m,LOC107602127,LOC107671036)


Basic Information

Item Value
gene id eif3m
gene name eif3m,LOC107602127,LOC107671036
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172850.1
NCBI id APWO02000117.1
chromosome length 3115925
location 2221969 ~ 2236883 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022665994.1
CCGGAAGCGCTTGAGTTCTTTTCCGGTCTGCAGGTCCGCGCTGTGTGAGGGTGTGCTGTAGCTGCGCGGTGTTGGAGCGGATAAAATGAGCGTTCCGGCTTTTATAGACATCACCGAGGAGGACCAGgcCTCAGAGCTGCGGGCCTACATCAAATCTAAAGGAGCGGAGATCTCTGAGGAGAACTCTGAGGGAGGTCTGCATGTAGACCTGGCTCAGATCATCGAGGCGTGCGACGTCTGCCTGAAAGATGATGATAAAGATGTGGAGAGTGTGATGAACAGCATCGTGTCTCTGCTGCTGATCCTGGAGACGGAGAAGCAGGAGGCTCTGATAGAGAGTCTGTGTGAGAAGCTGGTGAAGTTCCGGGAAGGCGAGCGGCCCTCTCTCAGGATGCAGCTCCTCAGTAACCTGTTCCACGGTATGGATGAGAACACGCCTGTGAGGTACATGGTGTACTGCAGTCTGATTAAGGTGGCCGCCACCTGCAACGCCATCAACTTCATCCCCACCGACCTGGACCAGGTGCGGAAGTGGATCATCGACTGGAATCTGACCACAGAGAAGAAGCACACGCTGCTGAGGCTGGTGTATGACGCTCTGGTCGACTGCAAGAAGAGTGAACCTGCAGCTAAAGTGATGGTGGAGCTTCTGGGCAGCTACACAGAGGATAATGCATCCCAGGCTCGAGTAGATGCCCACAGGTGCATTGTCCGTGCTCTGAAAGATCCGAACACGTTTCTGTTTGATCATCTCCTGGCTCTGAAACCCGTACGTTTCCTCGAGGGAGAACTCATCCACGATcTCCTGACCATCTTCGTGAGTGCGAAACTCGTGTCCTACGTCAAATTCTACCAGAGCAACAAAGACTTCATCGATTCTCTTGGTCTGTCACATGAGCAGAACATGGCGAAGATGAGGCTGTTGACCTTCATGGGCATGGCGGTGGAGATGAAGGAGATCTTGTTCGATACGATGCAGCAGGAGCTGCAGATCGGCGCTGAGGACGTGGAGGCCTTCGTCATTGATGcTGTTCGGACGAAGATGGTGTATTGCAAAATTGACCAGACGCAGAGGAAGGTCGTTGTGAGCCACAGCACACACCGCACCTTCGGtaagcagcagtggcagcagctgTACGACACCCTCAGCTCCTGGAAACAGAACCTGGTCACCGTCAAGTCCAGCCTGCAAACCCTCTCTCCAACCCCCTAACTCCACCTGCTCTGCTGAGCTTACACCCGTttcagtttttatatatatgcacaGCTAATAAACGACAAATGAAGACCAGA

Function

symbol description
eif3m Predicted to enable translation initiation factor activity. Predicted to be involved in cytoplasmic translational initiation. Predicted to act upstream of or within translational initiation. Predicted to be located in cytoplasm. Predicted to be part of eukaryotic translation initiation factor 3 complex. Is expressed in exocrine pancreas and gut. Orthologous to human EIF3M (eukaryotic translation initiation factor 3 subunit M).

NR:

description
Probable COP9 signalosome complex subunit 7

GO:

id name namespace
GO:0001731 formation of translation preinitiation complex biological_process
GO:0006446 regulation of translational initiation biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0003743 translation initiation factor activity molecular_function

KEGG:

id description
K15030 EIF3M; translation initiation factor 3 subunit M

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022665994.1 True 1293 mRNA 0.53 11 2221969 2236883

Neighbor

gene id symbol gene type direction distance location
cstf3 cstf3,LOC107671440 coding upstream 108985 2076601 ~ 2112984 (+)
LOC103031553 pcyt1a,LOC108440592,LOC108264716,LOC107091881 coding upstream 374385 1834677 ~ 1847584 (+)
LOC103029868 NA coding upstream 431093 1787316 ~ 1790876 (+)
omp omp,ompa,LOC107660685,LOC107735103 coding upstream 471726 1745320 ~ 1750243 (+)
LOC103038299 gdpd4a,LOC108431176,LOC108264809,LOC107735911,LOC107660699 coding upstream 587760 1585462 ~ 1634209 (+)
pex16 pex16,LOC107753012,LOC107669959,LOC106593118 coding downstream 757185 2994068 ~ 3009972 (+)
LOC103038331 LOC108433450 coding downstream 782276 3019159 ~ 3035820 (+)
cep126 NA coding downstream 833353 3070236 ~ 3107407 (+)
G308549 NA non-coding upstream 14177 2198840 ~ 2207792 (+)
G308552 NA non-coding upstream 26665 2194991 ~ 2195304 (+)
G308521 NA non-coding upstream 133800 2087108 ~ 2088169 (+)
G308501 rnpepl1 non-coding upstream 223222 1997233 ~ 1998747 (+)
G308474 NA non-coding upstream 287851 1862898 ~ 1934118 (+)
G308640 NA non-coding downstream 9428 2246311 ~ 2265533 (+)
G308645 NA non-coding downstream 64059 2300942 ~ 2301238 (+)
G308649 NA non-coding downstream 117244 2354127 ~ 2409980 (+)
G308658 NA non-coding downstream 171029 2407912 ~ 2410615 (+)
G308659 NA non-coding downstream 173794 2410677 ~ 2413833 (+)
G308535 depdc7,LOC107758055,LOC107576633 other upstream 78006 2131079 ~ 2143963 (+)
G308506 abcc5,LOC106580650,LOC107670605,LOC107671530,LOC107672635 other upstream 201838 2017464 ~ 2020131 (+)
serp1 NA other upstream 389295 1827904 ~ 1832674 (+)
G308090 NA other upstream 2035894 185337 ~ 186075 (+)
G308643 kifc3 other downstream 83008 2319891 ~ 2338166 (+)
G308680 NA other downstream 319444 2556327 ~ 2556569 (+)

Expression


Co-expression Network