G330202


Basic Information

Item Value
gene id G330202
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 2128703 ~ 2133153 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU454759
GTAATCCTAGGCATGTGCAATATACTCCACACCCATCAcactacagtaaatacaatatACCAGTAAAGCTCTAGGGGGAGGTGGGGATGTGACTGTTATCTGGGTGGAACCCACAATGCAAGAGCCTGAAAAGtggctttaaatgttttattatttgctttaatttaggaaagaataagaaaaagaatatgaacttctgtcataaatatatacaaaaatacagaatagtTTTCAGGTATTACCTTCAGTTAAATTTATCAGAATACCACTGAAACCATTCTGCACAAcacagaaaatatgaaaatcagaAAACAATCTttatacacatgcatttctttGAATACGGTAATAAATATACAATGGTAGATCTTGTGTTTAAATCTTTGCATAGAAATAATTTCAAGCAGAACAACTacataataaaatctaaaacacaaaatctacaaaaaaactaGCCATTCATTTGGCAGCAGTGCAGTGCATGCAAATATACAGAAATGGAACAGCAGCTTTGGGTAATGGTCACATCGAccatcagaataaaaaaagaactgcTGATCGGTGAATGgtggaataaagaaaaaacatatgcaTGGACAGATGCATTATTGATGAGAGAGATCAATTTATAAAGGCTAGACTGGTTGGAGCTAACAAAAAGACAACAGTAACACAGATAATCACTCACTAGTATTTCACTATGCTAGAATAAAGTAGCCTATTCAGATAACCTTCCATTTCAAAATATGCCCAGGAGCTACCCTGTACAGTATAAGTCTGATCTTCCtggtaaatatttaattgtatcaaGCACCAATCGTTTTAGCACTTTAGTACATATTGCTACTCCAGGTTTGACTCCTTCATAACTCAACAATGTCAATGTTGTGAATAAGAGCGGTTCACTCTGAACAATCTGCAACCATACAGATCATCcttggaaataaatatttttgaagtaaaaaatattccACTTGAAATATAAAGAAACTCAAGGcatcaaaaacacaaataaaattactactaaaactactgtACAAGCAAGACTGGCTGCACTAGCAGTTAGTTCTTCTTTATCAGAGAGCAGTGGATCCTCAGaggttgtattttttaatgtttttgaacAAATGCTTTattactaggggtgggaatgacagggcatctcacaatatAATATTATCTCGACATGTTGCCCATGACAATGATGATATCAGAATACTGGtattctctacgatacttcacaACAATGGTGCTACTGAGGAGGATAAaacactcctaaataagcaaataccagcaATTATGGATTTACAGCTGAGTTACAAAAATTATGTTCAGATGTAAAGTTATCAATTTGTACTGGCAAGTCCTGCTTCAGTCGattgctaaatatttttttggcaaGGCTagtctattatttttgttttgtacagTTTATACAAAAGTTATGGCACCCCAAAATATTTGAGTAACATTTATAGAAGTCTCAGATTAGCAAATAAGCTTGTAAAGTCTATGACTTGTTCACAGTCCTCATAAGGAAAGGCCTCAAAGAGTTCCTCAAAGAACGCTCATACATTAAAGAGGCTATAAACAAGATAGCAAAGTGTTTTTACATAGTTGTTTCTTCAATTCGTAATGTAATTAAGATATGGCATTTACTTAGAATGGTGGGGTCAAGCTATCACCAATAAGGAcaaaaaaatgttcagaaagAACTGATGGTATAATTGGTAGGAAGGCAAACCAAAACCCCAAAAAGACCTGTAAAAGACATTTAGGAACATTTACCAGATTGAAGTTTAGTTTTCGTCGGTGGCCATCTCTGAAGCACACAGGGAGCAGAAAGGGTTAAAGACCTTTGGGGTATTTAATcggggtattaaaaagagtttgttcTGCTGTTGTTGGTGTAACTATGTCTACTGTATAGGGAaggctttctttttttcccataatattatttatttttttctcaccaatttacccaacccactcattagaactccccctattactagcgatgccccaacaccaggagggtgaagactggcatttgcctcctccgacacatgtgaagtcagccactgcctctgcacgcttggaggaaagcgcagcgactgtggacatcacccttttggagtgatgtggggagagagctccatctttccacccagagagagcaaggccaattgtgctctctcagggctccggtagctgatggcaagctacgtgaacaggattcgaaccacaGATTTTCTACAAGATTTTGGATCATTGCTGTGTGGATTTGATAGCATTAAGCGACATTAAGCAAAAATTAGTGCGGCCAGAATGTTGGATGATTACCACCCTCCATCAGatcccaactcctcaactcatcccatatAGTGAATTACTGTTCAGCTACATATATACCGTATTTGAGtctcatattttaaatatcttcATTCAGCTAAGCAGCAACAGTCAGTGCACTATTGTGACACTTTGATCAGCCACAGCACAAGTGGGCAGCACCGGTTCTGTAAAAGCCTGTCTGACGGTGTGCAGAATGGACATAGTGTCAGGATCATAAAAGAGCAGAGTCTGCATGCTCCAGTCCAGCAGCATTGCCACTTTGGAGGGTCTCTTCACCACTGCTACAGAAATGTTCCTCCCATTATGGCAGAAGGAGAAGTCTCCATCATAGTGTGAAAGGACCCAGGACTTGGCGTTGTAGCCCAAGCGGGCATCGTTGCCTGTGCCCTTGCGCTGCATGCTGGCATAGCAGACACCCACTTTGAAGGCACCACTGGTGCCCACATCCAGGGCCCAGCTGTGCTGTCCTGAGGTGATGGGGTTTGAGCAGACAGCGTTGGGCCAGCTGTCGAATCGCTCCGGGTCGTATGGGGGTGACTGGCGCTGACGCTTGGGGAGGAAGGTGAGCGTACGGCCATCAGGTGACAGTGAGAGGAGAGGGCTGACGCTGCGCTGGTCGAAGTgcaggtgagctggagcacGACCTATCAAGTGGACAGAGGAGATATATTAATGTAAGTTATACTTTAAAGACTTTATCACACAGAATCTGATTTTTACATACCAAAAAAACACCATGAAGTTTTAAAAACAAGCCCACCGAGTCTGAAACTGACAGactgtgtacatttttaaaattggaGGCTGTGCAATtttctgcaatgtcacatgCATTAAAACCAGGCTAACCAGAGCATGTCAGGTAGGCCTTAGAGCAATGATGTCAGGATAATTAAATTAGcaatttatcatacaatatatggacattactttttttttgctaaatcaatACAGCCCATTGCATTAATGTGAATAAGCCAGTGTGCTGACTttgttaaaacagttttttatgtatgtttgtagatcatcagctcacagatgccttgtgctgatcaacatcaccccaggagtgatgaggggagagagcgacatctacccaccaagagagtgcaaggccaattgtgctctctcaggactccggtagctgatgacaaactacatgaacaggattcaaaccagcgatcaaAGCAGAAGAGTAGCAGAATACAAAAGCTTGAAACACAAACAACCCCCTtactatccattcatccatccattcatcctccTTGAAATGTACAGACAAATATATCACTTagaataaattagatttttctaCATGGGGTCATAGAGAGAATGAGGCTGCCTTGAGTTGTGGAGTGTGTAGCCCTTTTTTGCTAAATTTCCCTTTGGGtcaataaagtatccatccattcatcctttACAGAGCACAGAGAAAAAATGCCATAGGCACAGTGTGAAAGTTCCACTATGTTTAAAACTGCATCTGGCTAAAAAATCTCCTTGCACTACACTGATTGAATCACAGGGCAGGGGTACCCCCTGGACAGGGTGCCAGTCCTTTACAGggtactatacacacacatttatttacacattcACAAATTAGTACCTCAAGGAAACCCTCACAGactaacataattttttttcatgggCACACCATGCATAAACACCATACATATTTATGTTGTAGTCAATCAGCGTTCAGTGATTGCTCAGTTTGCATGTCAATCAAATGTCTTATTTCTGCAAACGTAGCCGGTGCTTGACACTGCTTTACTTGCATACCATCCCTCAGTCTCTTTTAAATAGGTATTAAGCTATGACATATGCCTTCTTGTCATTCACAGACAAATATCTCACTTTGAATAAATGAGATTTTTCCTAAATGGGGGCACAAGGAGAATGAGGCTGCCACGAGTGTGTGTCTGCGGGTGTGTACTGACCAGATGGTCCCAGCAGGAGAGCACTAGCCCACAGCCCCAACATGAGTTTGCTGTCACTGCAGTCCCTGTTCAAATTCAACTGCTCTGTGTCTTTGGGCTCCCCCACACCTTCAGCCTCCTCAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU454759 True 4426 lncRNA 0.41 2 2128703 2133153

Neighbor

gene id symbol gene type direction distance location
coq4 coq4 coding upstream 28907 2081642 ~ 2099796 (+)
fbxw5 fbxw5,LOC107697984,LOC107567701,LOC107746474,LOC107595987 coding upstream 77457 2039327 ~ 2051246 (+)
alad alad,LOC107596028,LOC107730348,LOC107746479,LOC107684385 coding upstream 92484 2026695 ~ 2036219 (+)
ssna1 ssna1,LOC107697981,LOC107684356,LOC107730341,LOC107559739 coding upstream 149175 1973883 ~ 1979528 (+)
spag8 NA coding upstream 272101 1843763 ~ 1856602 (+)
zmynd19 zmynd19,LOC107595986,LOC107684362,LOC107707776 coding downstream 11112 2144265 ~ 2155255 (+)
LOC107197743 NA coding downstream 22845 2155998 ~ 2169578 (+)
tmem141 tmem141 coding downstream 37436 2170589 ~ 2176146 (+)
sapcd2 sapcd2 coding downstream 47640 2180793 ~ 2207270 (+)
LOC103035353 NA coding downstream 89774 2222927 ~ 2227337 (+)
G330147 NA non-coding upstream 11846 2109175 ~ 2116857 (+)
G330136 NA non-coding upstream 25074 2103242 ~ 2103629 (+)
G330123 NA non-coding upstream 148631 1979795 ~ 1980072 (+)
G330112 anapc2,LOC106566731,LOC106563313 non-coding upstream 166918 1959673 ~ 1961785 (+)
G330092 NA non-coding upstream 314620 1812782 ~ 1814083 (+)
G330254 NA non-coding downstream 140938 2274091 ~ 2274301 (+)
G330257 NA non-coding downstream 145813 2278966 ~ 2279916 (+)
G330265 NA non-coding downstream 172803 2305956 ~ 2306407 (+)
G330271 NA non-coding downstream 210170 2343323 ~ 2344039 (+)
G330320 NA non-coding downstream 277418 2410571 ~ 2411110 (+)
G330088 NA other upstream 321684 1806403 ~ 1807019 (+)
LOC111191813 NA other upstream 572701 1555603 ~ 1556002 (+)
mast4 NA other upstream 662207 1275922 ~ 1466496 (+)
srek1 srek1,LOC107681054,LOC107684347,LOC107730337,LOC107574964,LOC107728210 other upstream 866568 1201248 ~ 1262135 (+)
kcmf1 kcmf1,LOC107691714,LOC107684340,LOC107728200 other upstream 1154039 951301 ~ 974664 (+)
G330426 NA other downstream 926472 3059625 ~ 3080267 (+)
LOC103033094 LOC108427157 other downstream 1143642 3276795 ~ 3281967 (+)
G330618 NA other downstream 1417671 3550824 ~ 3553582 (+)
LOC103031528 pbx3,LOC107725095,LOC107668307,LOC107591489 other downstream 1807442 3940595 ~ 4019463 (+)
LOC103037957 lmx1b,LOC108427190,LOC105902565,LOC107654328 other downstream 1968640 4101793 ~ 4165773 (+)

Expression


Co-expression Network