sapcd2 (sapcd2)


Basic Information

Item Value
gene id sapcd2
gene name sapcd2
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 2180793 ~ 2207270 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007254017.3
GCGAGGCGAGGGCGGGGAGAAGAAAAGTGTGGAGGGGAAAGTTGTGCGGGAACAGAGCGGGAGCTGCTGCGGTGGGAGTAGTGTGGctggagggtgtgtgtgtgtgtgtggatggggAGAGAGACTGTAAACAAAGAAGTTTTGTGATTTAACTTTAGGATTGTGGACTGTAGGACTGGTACTAGAGGTTTTGGAGCTCATACGTGTGGAGTGTATATCCTAAATTCTTCATAACTTCATGGCTTTAGTGGCGGCGGACCCCAACTGCAAGCGGAAAGCTCTCACCAACTCTTGCGGGTCTGCTGTCAGAAAGGAGGCCGTGCCGAGTAGTCACTCAGGCGGGGGGAAAGTGTGCAAAATGCAGCCGAAGGACGCGGAGTTCGCCACGGAGGGGCTGCCCAAAGCCTTCCTCCAGAGTCTGAGAACCCTGTTTGACATCCTGGACGACGGCAGGCGAGGCTACGTGCACATATCCGAGATCGAGAGCCGCTGGCAGGGCGCGGAGACGCAGGGTTTACCCGGCGGGGTGCTGGAGTGCCTGAGACGGGTGAGCCCCCCGCACGGCTGCCTGACGTTCGAGCGCTTCGTCGCGGGGCTTCGGTACTCCATGCTGAACCCGGAGAACAGTGCCAAAGCCCCGCACTCGTACCCCAACGGCTCCAAGGCACATCCACCGCTTCCCCACGCTCACAAAGCCGCCCAGGCGCCGCGACCCTACGAGGGGAAAGTGCGGCCGCTCGGCCCGAGCAACGGGGCCAACGTCCCGCATCACCATCAGCCCCACCACCCGTGCCGAGCATCCTCGCTCCAGAGCCGATCCAGATCCGAGGACAGCGGCTCGCTCGGCTTCTCCACCTCCAGCAAGCCTCCCTCCAGCGACTCCTCCACCTATGCCAGCCTGACGAGCGCCACCCCCAGATACCCCGGCTCAGGAGTAGTAGCAGGAGGTGGAGGTGTTGGTGGAGGGTACGAGCGGACCGGCAGGAGTCTGGAGCGCGCGCAGGTCGGGCACGAGCACGTCGTTCACAGAACTGACTCGGTTCGCGCCGCCAAGAAGCCGCAGCAGCAGAGTCGAGTCCGCTCAATCGAGTCACTGGCGCTCGAATCATCTTACTTCCCAAAGCCGAGTCCTTCTAGTGAAAGCACCGGTCTACCTCGATCACAGAGTGAGACTACTACAGGCTTCACAGGATCCAGAAGGCACGGGAGGACCCGAGATGAGCAGAGACGACACACAATCACTAATGGAGTTGACTATGGAATGTTAAAGCAGATGAAGGAGCTCGAGCAAGAGAAGGACACACTCCTGGCTGGGCTTGATGTGGTGGACAGAGCCAGAGAATGGTACCAGAGCCAgatccacagtgtcactgaGAGACAGAGGCTGGTTGGACAGAACAGCCACTGCACTGATTTTATGACAGAATCCAGTCAAAGTCGTCTGAATGTCCTTCTTCCTAAACTACAGGAAGTCAACCGCTGCCTTAATGATCTCATATCCTGCTCTGGAATGTCATTTCCTTCACCAAGTACACAGCCCACTTCCATCTCCCCAAACGTCCCGACAGTCCCAGCTCCTCCACAGGCCATCCAGAGACTGAAGGACCAAAACCGCCTTCTCACTCAGGAGGTGACAGAGAAGAGCGAGCGTATTACCCAGCTGGAGCAGGAGAAATCAGCTCTAATTAAGCAGCTGTTTGAGGCACGAGCTCGGAGTGCTCATGACAACAGTGCCCTCGACTCCACCTTCATATGAGAAGGACAAGAGCAACCACGTCACAACCACAGTGCAATCGACTGTGATTTTACTATGACCACTCCCTTTTACTGTGAACTGATGAGATTCTTCATACATGCTGCAGCTGAGTTAAGTGTGTTTGAAAAAGAACTCTTCCTGAGCAAGACTAAGACTGTAGAAGAATTTGCGCCactgaaaatggaaaatggaacTTGGGTCCCTGCGGTAATGGAACTTGTGTATCTGTTCTTCAGTCAACCATTTAATCAGTGAATAATCATCTTGCTCCCTTTAAGCTACTGGTCCTGAACAAATAACATTTGGAGTTCTGAGCTCATCACCTGAACAGCTAAACCATGCTATGATAAAGGACGGCTTGGATCACACATCAAAATCTAtcccaaaaatataatttttcatgaaaaacagaAACCCAACACTCCACAACTAAATGTTGCTGTTTACAGAATAGAGAACCCTCTCTATTTAACATAGAACATAAATGGTCTATGGATTTATTGTGCattggctgtgtaaatagtATTTGCTCGATCTCTTTACCCACTCCTTATGCCATGCTAATATACGAATCCTCAAACCACTCTTAATAGATAGGGATCCTTAAACTGAAAGTGATTTCACTACAGTCATTCTATATTCTTGACTGTtcattccttaaaaaaaaatacctggaACATGCATTGCAGTATTATCTACATAACATTTCCATCTCTCACACTCCAGCTAATCAGTTCAACGCATTGCATTGCTGCATGTTCAACAACTGgactgtttttacaccttttGACACACTTTGAGGTGTTTTATCTCAAAGCTGTGACTAAGCTATTTCATTTTGGGTTTGTAGTGTGATTTATTTCATAAATGACTGTAATGTCATTTGCATGTACTGTACATTTGGAGAAAGATGGACAAGGATTTGCTTGAATCTGATCCTTTTTTAAGGAGTCCAGCTCTGAAAGTAACAAATTTGATCTTTTGTGCATGGTTTCTTAAATAGGTGCTAGCCATCAATAGCTTTATTCAATGACTGTGTATAAGCATgggcactgttttttttttcgatcctttccattttttttaaaacaaaaaggtcATTCATGCCACTGTGTTGTTGAATTTGCACAGTAGAGGCCAAAGGTGTCTCACCTACTTATTTGAAAGACCTACCCTCTTCTCCCAGACCAAGCATCTCAGACCGCCGTTATTGAGTTTACAGTTCAGCCTAAAGGATTTTTCCACTGGACAACTAGTTTGTCCCCTAAGCTTTTTAACGTGAAAAGTGAAGCTTGTGTATTTCATTATGAAACAATTTACATTTGCTTCAAATTACAGTACTACAGAATCCAGCATGTGTAATCACAATAGAATGATCTGGCTggctaataaatcaataattagATCACATTGGTCATTTTACACTAATGTCACATGATCAATAACATTATATTTAACTACtctacacatcatactgcatCCAGCCAGCAGTATGATGGCACCACAGATTTCCATAAAGCTAGACCTGTGgcggcttcacttttgagagacattAAACTGTCCATGTTTTTCTACATTCATTGTTTTAACTTAAATCTAGCAGCTGAATCCGATGGTAATAGTATAAATTTGGATAGATTTGACGTTGATCTCACACATGGTATGTACATtgatgtaagaaaaaaaatgcttttctttACGTTTACATTTAAGACTGAGGAAGAACTAATGGCCTCAAGATGGTGGCCATATGAACCGAGAGCAGAGGAGGTGAAGGCTTGGGGCCGGGCTGAAGAGAAGAGACTTTGAGAAGTGGAAGAGACTTTGGTAATGAACTGAGTGTTTAAAGTGATTCTGATAATCATCCCAAGGtgataaatcacagttgcaGTTACTCTGTTAGCCTTCTTTCATGATGTTCAGCACACTAGAAGCATGTTTGCCGAAAAATTGACATTGGAAATTACCTCTGCACTTCAGCAAGGAATTTAGAGACTCCTTGGGTTGGATGGGCCCAAAATGATCCCTTGCTGAACGTAATCCTTGGTGAATTTTATTTGTAACAACAGGACATTGCAGAGCTTTATTTTTCACTTGGGCTGATCATGTAATATGAAATATGCTTGTGTGGTGTCTGAGAGTGTTACAAATTGTAATTAATCACTATATACCATGGCGAATAAACACTAAATGCGGTTTCCATCTG
>XM_022667769.1
CGTTCCAGAGGGGCGGAGCGAGGCGAGGCGAGGGCGGGGAGAAGAAAAGTGTGGAGGGGAAAGTTGTGCGGGAACAGAGCGGGAGCTGCTGCGGTGGGAGTAGTGTGGctggagggtgtgtgtgtgtgtgtggatggggAGAGAGACTGTAAACAAAGAAGTTTTGTGATTTAACTTTAGGATTGTGGACTGTAGGACTGGTACTAGAGGTTTTGGAGCTCATACGTGTGGAGTGTATATCCTAAATTCTTCATAACTTCATGGCTTTAGTGGCGGCGGACCCCAACTGCAAGCGGAAAGCTCTCACCAACTCTTGCGGGTCTGCTGTCAGAAAGGAGGCCGTGCCGAGTAGTCACTCAGGCGGGGGGAAAGTGTGCAAAATGCAGCCGAAGGACGCGGAGTTCGCCACGGAGGGGCTGCCCAAAGCCTTCCTCCAGAGTCTGAGAACCCTGTTTGACATCCTGGACGACGGCAGGCGAGGCTACGTGCACATATCCGAGATCGAGAGCCGCTGGCAGGGCGCGGAGACGCAGGGTTTACCCGGCGGGGTGCTGGAGTGCCTGAGACGGGTGAGCCCCCCGCACGGCTGCCTGACGTTCGAGCGCTTCGTCGCGGGGCTTCGGTACTCCATGCTGAACCCGGAGAACAGTGCCAAAGCCCCGCACTCGTACCCCAACGGCTCCAAGGCACATCCACCGCTTCCCCACGCTCACAAAGCCGCCCAGGCGCCGCGACCCTACGAGGGGAAAGTGCGGCCGCTCGGCCCGAGCAACGGGGCCAACGTCCCGCATCACCATCAGCCCCACCACCCGTGCCGAGCATCCTCGCTCCAGAGCCGATCCAGATCCGAGGACAGCGGCTCGCTCGGCTTCTCCACCTCCAGCAAGCCTCCCTCCAGCGACTCCTCCACCTATGCCAGCCTGACGAGCGCCACCCCCAGATACCCCGGCTCAGGAGTAGTAGCAGGAGGTGGAGGTGTTGGTGGAGGGTACGAGCGGACCGGCAGGAGTCTGGAGCGCGCGCAGGTCGGGCACGAGCACGTCGTTCACAGAACTGACTCGGTTCGCGCCGCCAAGAAGCCGCAGCAGCAGAGTCGAGTCCGCTCAATCGAGTCACTGGCGCTCGAATCATCTTACTTCCCAAAGCCGAGTCCTTCTAGTGAAAGCACCGGTCTACCTCGATCACAGAGTGAGACTACTACAGGCTTCACAGGATCCAGAAGGCACGGGAGGACCCGAGATGAGCAGAGACGACACACAATCACTAATGGAGTTGACTATGGAATGTTAAAGCAGATGAAGGAGCTCGAGCAAGAGAAGGACACACTCCTGGCTGGGCTTGATGTGGTGGACAGAGCCAGAGAATGGTACCAGAGCCAgatccacagtgtcactgaGAGACAGAGGCTGGTTGGACAGAACAGCCACTGCACTGATTTTATGACAGAATCCAGTCAAAGTCGTCTGAATGTCCTTCTTCCTAAACTACAGGAAGTCAACCGCTGCCTTAATGATCTCATATCCTGCTCTGGAATGTCATTTCCTTCACCAAGTACACAGCCCACTTCCATCTCCCCAAACGTCCCGACAGTCCCAGCTCCTCCACAGGCCATCCAGAGACTGAAGGACCAAAACCGCCTTCTCACTCAGttgcaagaaagaATTGGTCCAAAGCATTTGGCAAGTATTATAGCTTCTTGGTAGTCTGTTGTGTTTAGGCTAGGTATTTAGATGTGATGTTTTGTTTCAGAATTTCCTAGTATTTAATTCAATCCATCATTTCCTCTACAAGTGAAATGTTAATGCTAGGGGTGTCccaattaaacttttttttctgctgataATGAGTCCCGATCCAATGCagcaaaaaagaaacacattgaaGTTGTTCTTTAATGTGCTAAGTTAAGCTGAGCTTTAATAGAGGAAATAAACGCTAGTGTAGCTGCCTATATtgtctatttttctttcttgaaATTTCACATTGAAAAGGTGAtttcttctctgattttgctatttataggtatatgtttgattaaaatcagcattgttcttttattctataaactacgcacAACATTTGTTCCAAATTCTATCaaaaaagagcatttatttgcataaaatgaaaaatgcctgaaataacaaaaagatgcag

Function

symbol description
sapcd2 Is expressed in blood; central nervous system; intestine; liver; and proliferative region. Orthologous to human SAPCD2 (suppressor APC domain containing 2).

NR:

description
PREDICTED: suppressor APC domain-containing protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007254017.3 True 3962 mRNA 0.47 6 2180815 2207270
XM_022667769.1 False 2154 mRNA 0.52 6 2180793 2204198

Neighbor

gene id symbol gene type direction distance location
tmem141 tmem141 coding upstream 4647 2170589 ~ 2176146 (+)
LOC107197743 NA coding upstream 11215 2155998 ~ 2169578 (+)
zmynd19 zmynd19,LOC107595986,LOC107684362,LOC107707776 coding upstream 25538 2144265 ~ 2155255 (+)
coq4 coq4 coding upstream 80997 2081642 ~ 2099796 (+)
fbxw5 fbxw5,LOC107697984,LOC107567701,LOC107746474,LOC107595987 coding upstream 129547 2039327 ~ 2051246 (+)
LOC103035353 NA coding downstream 15657 2222927 ~ 2227337 (+)
LOC103025811 NA coding downstream 37605 2244875 ~ 2262095 (+)
LOC103023205 LOC108437210,LOC108260282,LOC107670394 coding downstream 138020 2345290 ~ 2353250 (+)
mtfp1 mtfp1 coding downstream 170439 2377709 ~ 2390389 (+)
LOC103034713 NA coding downstream 185053 2392323 ~ 2398522 (+)
G330202 NA non-coding upstream 47640 2128703 ~ 2133153 (+)
G330147 NA non-coding upstream 63936 2109175 ~ 2116857 (+)
G330136 NA non-coding upstream 77164 2103242 ~ 2103629 (+)
G330123 NA non-coding upstream 200721 1979795 ~ 1980072 (+)
G330112 anapc2,LOC106566731,LOC106563313 non-coding upstream 219008 1959673 ~ 1961785 (+)
G330254 NA non-coding downstream 66821 2274091 ~ 2274301 (+)
G330257 NA non-coding downstream 71696 2278966 ~ 2279916 (+)
G330265 NA non-coding downstream 98686 2305956 ~ 2306407 (+)
G330271 NA non-coding downstream 136053 2343323 ~ 2344039 (+)
G330320 NA non-coding downstream 203301 2410571 ~ 2411110 (+)
G330088 NA other upstream 373774 1806403 ~ 1807019 (+)
LOC111191813 NA other upstream 624791 1555603 ~ 1556002 (+)
mast4 NA other upstream 714297 1275922 ~ 1466496 (+)
srek1 srek1,LOC107681054,LOC107684347,LOC107730337,LOC107574964,LOC107728210 other upstream 918658 1201248 ~ 1262135 (+)
kcmf1 kcmf1,LOC107691714,LOC107684340,LOC107728200 other upstream 1206129 951301 ~ 974664 (+)
G330426 NA other downstream 852355 3059625 ~ 3080267 (+)
LOC103033094 LOC108427157 other downstream 1069525 3276795 ~ 3281967 (+)
G330618 NA other downstream 1343554 3550824 ~ 3553582 (+)
LOC103031528 pbx3,LOC107725095,LOC107668307,LOC107591489 other downstream 1733325 3940595 ~ 4019463 (+)
LOC103037957 lmx1b,LOC108427190,LOC105902565,LOC107654328 other downstream 1894523 4101793 ~ 4165773 (+)

Expression


Co-expression Network