LOC103034713


Basic Information

Item Value
gene id LOC103034713
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 2392323 ~ 2398522 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022667844.1
CAGCAATTACAAAAGGCTTGCAAGAACCAGCACCACCATTTTGCCTGAAGATGGGTTTGATACAGGGTGGTCTGCTCTTACTTTTTGTGGTTTCTACTTTGAGCCAAAGAGATCTAGTAATTGACTGTAAAGCCAATACGGTCACTGTTAAATGGAGGCCTGCTTTGAACTCGGCTCAAAAAGTAGATATTTCTCAAGCTCTTCTGGGTAGATGTCGACCATCCAGTGTGGCTGAGAATGTTCTGCTGTTCTCTGTTTGGATCCATGACTGTGGCTTCAGAAGACAGGTGGTTGAGGACAAGGTGACCTACACTAATCTGCTGACATATGGACTAGACTCTGGAGTTCCTTCCATTGTAAAGCGAGTGGAGTGTATTTATGACTCGTCTGGGAAGACGATGTACTCAGAAAAGGCTAAGAATGACCTTGTCTTCACCCTGGAGTTCATGAACAGTGATTTCACTGAGCCTGCCCAATCCTCCATGTTTACCCTGGACTCCAGAATTCACATTAAGGCCGAAGTGGAGCAGCAGGACTCTGAGAGTCTGCAGATTTACCTGCAGAGCTGTGTGCTAGCAACATCTCCAGACCTCCCTCATGCCAGCCAGCTGCATACAGTCATTTCCAATTCTGGGTGCCTCACTGAAAGCAAGGAAGGTAACTCTGCGTTCTTGCCAAGACGGAGGCCCTCCGAAATCCTCTTTTATTTTCAAGCCTCTGCCTTAGGAGAGAATATTTTCTTACACTGTGAGATGGCGGCAAGGGATCCCCAGAGTTTTAGTGCAGATATAAAGGCTTGCCAGTACATGAAGGAGCAAAAGAGTTGGATGCTTCTGGATCACCCATCTCAAAGCTACATCTGTAGCTGCTGTGACACTGGATGTACAACAAGAACCAACCTTGTACCTGGGACAACAACACAGAAGGTTCTTGGGCCCTTTGCAGTAGTTGAACCTCAGAACAAAACTTCCGGCACATTCTGGACTGCTGAAGAAGAACTGTCTGGGGTCCCAGTATGGGTGGTGGTGGTCACCGTCCCAATGGTGCTTCTTCTATTGGCAGGAGCCATTGCAACTGGCTACTATTTGTGCTTTTGGAGAGGTGGAAGAATCGGATACAGGCCTAGACGAGATCTTCTCACCAAGTATTAAGCCTCTTAATAAAGATGAGCATTCTTAAAGGCCAAA
>XM_022667845.1
CAGCAATTACAAAAGGCTTGCAAGAACCAGCACCACCATTTTGCCTGAAGATGGGTTTGATACAGGGTGGTCTGCTCTTACTTTTTGTGGTTTCTACTTTGAGCCAAAGAGATCTAGTAATTGACTGTAAAGCCAATACGGTCACTGTTAAATGGAGGCCTGCTTTGAACTCGGCTCAAAAAGTAGATATTTCTCAAGCTCTTCTGGGTAGATGTCGACCATCCAGTGTGGCTGAGAATGTTCTGCTGTTCTCTGTTTGGATCCATGACTGTGGCTTCAGAAGACAGGTGGTTGAGGACAAGGTGACCTACACTAATCTGCTGACATATGGACTAGACTCTGGAGTTCCTTCCATTGTAAAGCGAGTGGAGTGTATTTATGACTCGTCTGGGAAGACGATGTACTCAGAAAAGGCTAAGAATGACCTTGTCTTCACCCTGGAGTTCATGAACAGTGATTTCACTGAGCCTGCCCAATCCTCCATGTTTACCCTGGACTCCAGAATTCACATTAAGGCCGAAGTGGAGCAGCAGGACTCTGAGAGTCTGCAGATTTACCTGCAGAGCTGTGTGCTAGCAACATCTCCAGACCTCCCTCATGCCAGCCAGCTGCATACAGTCATTTCCAATTCTGGGTGCCTCACTGAAAGCAAGGAAGGTAACTCTGCGTTCTTGCCAAGACGGAGGCCCTCCGAAATCCTCTTTTATTTTCAAGCCTCTGCCTTAGGAGAGAATATTTTCTTACACTGTGAGATGGCGGCAAGGGATCCCCAGAGTTTTAGTGCAGATATAAAGGCTTGCCAGTACATGAAGGAGCAAAAGAGTTGGATGCTTCTGGATCACCCATCTCAAAGCTACATCTGTAGCTGCTGTGACACTGGATGTACAACAAGAACCAACCTTGTACCTGgtgttttttccccctcatcTTTCATCAAGGGACAACAACACAGAAGGTTCTTGGGCCCTTTGCAGTAGTTGAACCTCAGAACAAAACTTCCGGCACATTCTGGACTGCTGAAGAAGAACTGTCTGGGGTCCCAGTATGGGTGGTGGTGGTCACCGTCCCAATGGTGCTTCTTCTATTGGCAGGAGCCATTGCAACTGGCTACTATTTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022667844.1 True 1187 mRNA 0.47 10 2392323 2398522
XM_022667845.1 False 1117 mRNA 0.47 10 2392323 2398423

Neighbor

gene id symbol gene type direction distance location
mtfp1 mtfp1 coding upstream 1934 2377709 ~ 2390389 (+)
LOC103023205 LOC108437210,LOC108260282,LOC107670394 coding upstream 39073 2345290 ~ 2353250 (+)
LOC103025811 NA coding upstream 130228 2244875 ~ 2262095 (+)
LOC103035353 NA coding upstream 164986 2222927 ~ 2227337 (+)
sapcd2 sapcd2 coding upstream 185053 2180793 ~ 2207270 (+)
LOC103022378 med13l coding downstream 19293 2417815 ~ 2541138 (+)
med13l med13l coding downstream 163990 2562512 ~ 2603329 (+)
tbx3 tbx3,LOC108410648,LOC107687999,LOC107597930 coding downstream 510467 2908989 ~ 2917246 (+)
tbx5 tbx5,LOC107745406,LOC107688016,LOC107670381 coding downstream 542266 2940788 ~ 2965284 (+)
LOC103045876 Rab14,rab14,LOC105889591,LOC103045876,LOC107566859,LOC101069277,LOC103390174,LOC107670386,LOC100710169,LOC107729136 coding downstream 683383 3081905 ~ 3097899 (+)
G330271 NA non-coding upstream 48284 2343323 ~ 2344039 (+)
G330265 NA non-coding upstream 85916 2305956 ~ 2306407 (+)
G330257 NA non-coding upstream 112407 2278966 ~ 2279916 (+)
G330254 NA non-coding upstream 118022 2274091 ~ 2274301 (+)
G330202 NA non-coding upstream 259170 2128703 ~ 2133153 (+)
G330320 NA non-coding downstream 12049 2410571 ~ 2411110 (+)
G330324 NA non-coding downstream 55797 2454319 ~ 2457714 (+)
G330325 NA non-coding downstream 90883 2489405 ~ 2490015 (+)
G330327 NA non-coding downstream 97772 2496294 ~ 2527658 (+)
G330328 NA non-coding downstream 100860 2499382 ~ 2501030 (+)
G330088 NA other upstream 585304 1806403 ~ 1807019 (+)
LOC111191813 NA other upstream 836321 1555603 ~ 1556002 (+)
mast4 NA other upstream 925827 1275922 ~ 1466496 (+)
srek1 srek1,LOC107681054,LOC107684347,LOC107730337,LOC107574964,LOC107728210 other upstream 1130188 1201248 ~ 1262135 (+)
kcmf1 kcmf1,LOC107691714,LOC107684340,LOC107728200 other upstream 1417659 951301 ~ 974664 (+)
G330426 NA other downstream 661103 3059625 ~ 3080267 (+)
LOC103033094 LOC108427157 other downstream 878273 3276795 ~ 3281967 (+)
G330618 NA other downstream 1152302 3550824 ~ 3553582 (+)
LOC103031528 pbx3,LOC107725095,LOC107668307,LOC107591489 other downstream 1542073 3940595 ~ 4019463 (+)
LOC103037957 lmx1b,LOC108427190,LOC105902565,LOC107654328 other downstream 1703271 4101793 ~ 4165773 (+)

Expression


Co-expression Network