LOC103045876 (Rab14,rab14,LOC105889591,LOC103045876,LOC107566859,LOC101069277,LOC103390174,LOC107670386,LOC100710169,LOC107729136)


Basic Information

Item Value
gene id LOC103045876
gene name Rab14,rab14,LOC105889591,LOC103045876,LOC107566859,LOC101069277,LOC103390174,LOC107670386,LOC100710169,LOC107729136
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 3081905 ~ 3097899 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253992.3
AAACCCTGTGCCGCCGCCCCGCCATCTTGGACaggcagtctctctctctccctctctccagcCCAGGCGACCTGCAGATCCCTCCGGGAAGCCCACGGCGTCCAGACCAGCACCACAGACCCCGagccaAAATGGCCACTGCACCATACAACTACTCCTACATCTTTAAGTACATCATCATCGGGGACATGGGGGTAGGGAAGTCATGTTTGCTTCACCAGTTTACAGAAAAGAAATTCATGGCAGACTGCCCTCACACGATCGGCGTGGAGTTTGGGACGAGGATAATTGAGGTGAACGGCCAGAAGATCAAGCTGCAGATATGGGACACGGCGGGGCAGGAGCGCTTCAGGGCCGTCACACGCAGCTACTACAGGGGAGCCGCTGGGGCACTTATGGTGTACGACATCACCAGgagAAGCACATATAACCACCTTAGCAGCTGGCTTACTGACGCCAGGAACCTAACTAACCCCAATACTgTGATCATTCTCATAGGAAACAAAGCAGACCTAGAAGCTCAGAGAGATGTGACGTATGAAGAAGCCAAGCAGTTTGCAGAGGAGAATGGGCTGCTATTCCTGGAAGCCAGTGCAAAAACAGGTGAAAACGTAGAGGATGCTTTCCTGGAGGCGGCGAAAAAGATCTACCAAAACATTCAAGATGGCAGCCTGGACCTGAACGCAGCCGAATCGGGGGTCCAGCACAAGCCATCTGCACCTCAGGGCGGCCGGCTAACGAGCGAACCACAACCTCAGAGGGAAGGATGCGGCTGCTAATGACCAACACCAcctgcctacctacctatcgacctacttacttacctacctacctaccccaCCCAGCACCACCCTAAACCTTCtcctcatgttctcctcctcctcctcctctcacatCACCCCATCCAGGCCCCAATCTGCCCTGTCCTGACCTGCAGCGGAGCACGATCAGGGGCCGGAGACAGGAGGGGAACGACGGACAGGCTCAGCTGTTTCTCatcctctctttccctttcaCGACTCGATTCTCTCacttgtttgtcttttttcatGTCATTGGTCTTTttcccctccctccttccctccatctGATTTGGAGCACTGACTTGCTATCGCTATCCATGGATAGATACACAGATCACATGGTACAGACCTGTTCTGAGGAAAAGCTGAGGTTACTGACTATAAGAAGGCCGGCTGAGAGATTCAAGCaggttatgtatttttttttattcattaattcattcattcgttCATTTTATAGCTCCATAATTTGCACACACATCAGTTTCTTTGCAAGATTTTGCAAATCCAGAGCCTCGTAGAAAGTAGTGCTCGGTTAATGCCTCTCCCGCACGGTTCAGTTTATGACAACggtattatttaagaaaagcgGACAATATTAATAGGATTATGCTGAGCTCAGTAATGACGTTCGACCCTCAGCATTGAGGGATAGAGATGTTTTTGTAAGACAAGATGATGTACAGTGCAGCTTCACGACTGTGAAAGAAAGATGGTGTGGCAAGCAGTTAGCTGTGTGACTGTTTATTTTAAGGCTTCAGAAATAAATGTGTGGGAGACCAAGTAAAAGCAGAGTGAGCTGGTCTTGGTCAGtgagctagatagatagatggatagatttCTTACCTGTGCTCCACTGTTAGGTTGCCCTTTTTTGGACCTGCAGAAAGAATATACTGATATactgacaaaacactgaatgattGAGAAACAGCCCTTTTAGAATCTACAAACTTGATCTACAGCTTCTGTACAAAGAGAGAAGTCCCcagatgttatatatatatatataatgtgtatatgtatgtattatgtatgtacGTACATTTGATGAGTGGAGGGGTATTATGAGCTCGTCATGTTTGCTAGATCTTGGTGGAGGTACAAAGTTGTAGGTGGTTGTAGTGGGTTGAGTCTTCACTCACAGAAAATGACACTTTAAGGAAAGACGCCCAAACCCAACCTTTTTCACATCCGCTCCGATTATCGAAAGCGATTATCGATTTCTGCGTCAAGTCAACTAGGAGTCTACAGGCGGGAATATGATACTcagcagaccaatcacagttgcTGCGATCTGCATAACTGACAGTGTGACTCGTGGTTACATTTCTGGGAAGGTCCACGTCAGGCTACAGCGAAGGCTATGGCGTACATTCAGACTCAAAAGTATAAATTAGCCTTTATTTCCTCTTCCGATTATTCTGATTTGTATGTTTCATTGCATCAATCCCCCACTCCACCTCCATCTCTCTAATGCTGCCTCtctatacattttgtttttgctgtttctgCTCGACCATATCAAATACAACTCATTCTGTCCATACCAGCATTTTCGTTGTTGTTGCCTTAtgatattaatgttaatcttattattatattattaccaTCACTGTTTCATCTTACATCGTTGCGACTTTGTTTGTGTTGTTGGACAGATTGGATTTCTCTTCGTCCAAATAAATCATTACGGTTATACAACATCgctactttttattttagctcTCGCAACAGAGCGCGATAGGGAAAAGGTCTAGTGAACTGCGCTACGCTGCGCTGCTCTGCGATAGACGTGCTTGTCTCGGGCTGTAAATTTGACTGGCCGCTGTCATATAGGCTTGTATAGTAATTAACTTAACAGCAAAACTGCACAAACCCTAAATCCCACCAAACCAGCTTCTGCTGCAGTGTTAGAAAGGAATGGGGGTTTGGATTGGACTTGTGTATGTATCATTATAAAAATCTTCTTCTTCAGCAGCTGTAAATATGGCTAAATATCTGTTGGTGATCAATAATGCAATGggcgagggagggagggagggagggagggagggagtggcACAATAGACAGCATCACTGACTCTGTTGTACAGTTGTTCCAGGTCACTGGTAGGAAATTCTTTAACGTTTTCTATGACTAATCGTGTGCGTGTGGacagactcactcactcactctctctgctCACTGGGTGTTCTACTGAAGCTCCACTATGCACCTACCTGTTCTATGACTAAAACAGTAGTAGCAGACTTTTAAAGCATGGATTGGTGCAGCACTCAGTTTGCATCCTGATTAAAACTCAGCTTCAATctggcaaaacaaacaaacaaatcatcTTTCTATTCATGTCCTTAATCAACTCTTAccttttacacacaaacattctACTTTACTGAGGAGGTCATGCTGTCTGGAGAGTGagaggtgtttattatttttttattattttttttgtttgttgtttttttgaggGTGGAGTCCACCTTATGCTCTGTCCGTCTGAATGACCACTTCTATGTGCTCACACGAGTTGAAAGCGTATGTATGAAtttatacatatgtatacattttGAAGGAGCTGTGCTAACATTTAAAATGCGTTCTTGCGTgtatatgattttaaaatgttgacattttgattttaataatgataataaaaatgttctagACAGAAAGTA

Function

symbol description
rab14 Predicted to enable GTPase activity. Predicted to be involved in Golgi to endosome transport; intracellular protein transport; and phagolysosome assembly involved in apoptotic cell clearance. Predicted to act upstream of or within defense response to bacterium; endocytic recycling; and phagosome maturation. Predicted to be located in Golgi apparatus and endosome. Predicted to be active in early endosome and phagocytic vesicle. Is expressed in several structures, including axis; nervous system; neural tube; notochord; and trigeminal placode. Orthologous to human RAB14 (RAB14, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-14 isoform X1

GO:

id name namespace
GO:0006895 Golgi to endosome transport biological_process
GO:0032880 regulation of protein localization biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0045176 apical protein localization biological_process
GO:0007589 body fluid secretion biological_process
GO:0008543 fibroblast growth factor receptor signaling pathway biological_process
GO:0015031 protein transport biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0032456 endocytic recycling biological_process
GO:0009790 embryo development biological_process
GO:0030670 phagocytic vesicle membrane cellular_component
GO:0048471 perinuclear region of cytoplasm cellular_component
GO:0005765 lysosomal membrane cellular_component
GO:0005770 late endosome cellular_component
GO:0030140 trans-Golgi network transport vesicle cellular_component
GO:0005791 rough endoplasmic reticulum cellular_component
GO:0005795 Golgi stack cellular_component
GO:0005829 cytosol cellular_component
GO:0042175 nuclear outer membrane-endoplasmic reticulum membrane network cellular_component
GO:0055037 recycling endosome cellular_component
GO:0000139 Golgi membrane cellular_component
GO:0031901 early endosome membrane cellular_component
GO:0097208 alveolar lamellar body cellular_component
GO:0016324 apical plasma membrane cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019003 GDP binding molecular_function

KEGG:

id description
K07881 RAB14; Ras-related protein Rab-14

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253992.3 True 3485 mRNA 0.44 8 3081905 3097899

Neighbor

gene id symbol gene type direction distance location
tbx5 tbx5,LOC107745406,LOC107688016,LOC107670381 coding upstream 116621 2940788 ~ 2965284 (+)
tbx3 tbx3,LOC108410648,LOC107687999,LOC107597930 coding upstream 164659 2908989 ~ 2917246 (+)
med13l med13l coding upstream 478576 2562512 ~ 2603329 (+)
LOC103022378 med13l coding upstream 540767 2417815 ~ 2541138 (+)
LOC103034713 NA coding upstream 683383 2392323 ~ 2398522 (+)
spr LOC108429720 coding downstream 51856 3149755 ~ 3155659 (+)
LOC103034071 smyd1 coding downstream 60694 3158593 ~ 3173052 (+)
thnsl2 thnsl2 coding downstream 81496 3179395 ~ 3188140 (+)
dqx1 dqx1 coding downstream 99886 3197785 ~ 3213797 (+)
LOC103043336 NA coding downstream 121724 3219623 ~ 3226802 (+)
G330414 NA non-coding upstream 65682 3010340 ~ 3016223 (+)
G330383 NA non-coding upstream 270660 2810974 ~ 2811245 (+)
G330379 NA non-coding upstream 307050 2774530 ~ 2774855 (+)
G330344 NA non-coding upstream 524042 2557505 ~ 2557863 (+)
G330327 NA non-coding upstream 554247 2496294 ~ 2527658 (+)
G330432 abl1,LOC106563284 non-coding downstream 6261 3104160 ~ 3104718 (+)
G330437 exosc2,exos2,LOC106566956 non-coding downstream 43808 3141707 ~ 3146762 (+)
LOC103042413 NA non-coding downstream 174759 3272658 ~ 3275208 (+)
G330513 NA non-coding downstream 179724 3277623 ~ 3277822 (+)
G330554 NA non-coding downstream 212432 3310331 ~ 3310723 (+)
G330426 NA other upstream 1638 3059625 ~ 3080267 (+)
G330088 NA other upstream 1274886 1806403 ~ 1807019 (+)
LOC111191813 NA other upstream 1525903 1555603 ~ 1556002 (+)
mast4 NA other upstream 1615409 1275922 ~ 1466496 (+)
srek1 srek1,LOC107681054,LOC107684347,LOC107730337,LOC107574964,LOC107728210 other upstream 1819770 1201248 ~ 1262135 (+)
LOC103033094 LOC108427157 other downstream 178896 3276795 ~ 3281967 (+)
G330618 NA other downstream 452925 3550824 ~ 3553582 (+)
LOC103031528 pbx3,LOC107725095,LOC107668307,LOC107591489 other downstream 842696 3940595 ~ 4019463 (+)
LOC103037957 lmx1b,LOC108427190,LOC105902565,LOC107654328 other downstream 1003894 4101793 ~ 4165773 (+)
G330975 NA other downstream 1723243 4821142 ~ 4822152 (+)

Expression


Co-expression Network