LOC103043336


Basic Information

Item Value
gene id LOC103043336
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 3219623 ~ 3226802 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_007253983.3
tttccaccttgTGAAAGACTCATCTGGCTGCTCTCCACCAGAAACACGTTTATTCTGAGAAGAACACACCAAGAACACAAgatcaTCTTGACAACCAATAAGCTTACAGTATCAGTAATGCTAGTAGTTATCGTAAGTCTCGAGattttattcactgtttatttGCCATTTATATACTGTTAATTTATGCACAGTTTAGGTCACTGCTTACCACATGTACATACTGGGGAAACATTTCCCTCTAatcttttatatttctttatatttatatttttcttgtatttttcatGAAAAAGCCTGGCTTGCATTCTTCACCTTCATCCTTGAGGTCAGGTACTTTGTGCAGCTTTTGAAAAGCAGAAATCCACATAATTTTCCTCCAGGACCGTGGGGTTTGCCTTTTCTGGGAAACATTTCAGTTGGTTTGGACCAGCATGCTATTGAGAAGCTGTCTGTGAAATACGGTGATATTTTCAGCCTCAGAGTTGCTACTCAGAAGATAGTTGTGGTGTCAGGATATAAACTGGTGGAAGAAGTTCTGCTCACTCAGGGACACAACTTTCTGGACCGCCCTGTGTCTCCACTGTTTAATGAAGTGTACCAGGGGAATGGCATATGTAAAAGCAGTGGATACAGGTGGAGGAGGCAGAGGCAGTTTTTTGATTCTCAGCTGAAGAAATCCGGAGAAGCCAAAAGAAAGCAGGAGTTGATTATTCAGCAAGAATGCGTCTTTTTGTGTGAGGCTATCCAAAAGAACAAAGGATGTCCCTTCAATCCACATCCCATTATCAACAGTGCGGTAGCTAATGTTATTGCCTCTTTGGTGTTTGGAAAGCGCTTTGACTATGAGGACACTGATTTCCTGAACCTCCTGAACCTCAGTGCAGAGTCGTCCCTCCTGGCAGGTTCACCACTTGTCCAGGTCTATGGTGAATTCCCTTCACTTATGAAGCGTTTTCAAGGACCACATACCAAGATTTGGGCCAACTACGCCACAATGGTGGGATTTCTGAAGAAGCAGATTGAGATGCACAAGAAGGATTGGGATCCATTTGTCCACCGTGATTTCTCTGATGTTTATATTGGGGAAATAGACAAGCGAAGGAGAGATACGGATGCTGCCTTCAGTGTGGACAATTTGGCTCACTGTGTTCTGGACCTAATTGAAGCTGGGACAGGACCCATGACCAGTACCTTGTGCTGGGGTCTTCTCCTCATGGCCAAACATCCTGAAGTCCAGAAGGGGGTCCAGGCTGAGATTGACTGTGTGATCGGACAATCCAGACGGCCATGTCTGCTGGATAGAGCCAGCATGCCGTACACTGAGGCAGTATTACATGAAATCCAGAGAGTGGGCAACATCCTGCCTCTGGGAATACCTCACAGTGCTGGAAGAGACACCACAGTGTGCAACTACTTCATTCCTAAGGGCACTGTGGTAGTCACCAACCTGGCATCTGTGCTGAATGATAAAACACAATGGGAAAGACCACAGCAGTTTTATCCCGAGCACTTTCTTGATGACCAGGGCAAGTTTCGGAACAGGGAGGCATTTCTTCCTTATTCAGCAGGAAAGAGAGCGTGCCTTGGAGAGAATCTCGCACGCATGGAGATCTTCCTCTTCTTCACCTCTGTCCTTCAGCGCTTTACAATCTCCGCTCCACAAGGTGTGAAGCTGAGCATGGAGGCCCATGGAGCTTCATTACTGTCTCCTAAACCTTTCCACATCTGTGTGTCCTCAcgctgaactgttttttttattttgcatacatTACTTGACATTAGTAAATCCTGTTTTTAACATTATTGTGAGTTTACAATGTTCACTGTCTGAAGAGGTTTAAATAAGACAGCCTAATAAATGTTTGGGGGGTATCCTAACATTTTATGTccttatttaattaaatgttgtttaaatgaaGATTAAATTTTCAcatgttta

Function

GO:

id name namespace
GO:0017040 N-acylsphingosine amidohydrolase activity molecular_function

KEGG:

id description
ko00590 Arachidonic acid metabolism
ko00591 Linoleic acid metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
XM_007253983.3 True 1942 mRNA 0.43 11 3219623 3226802

Neighbor

gene id symbol gene type direction distance location
dqx1 dqx1 coding upstream 5826 3197785 ~ 3213797 (+)
thnsl2 thnsl2 coding upstream 31483 3179395 ~ 3188140 (+)
LOC103034071 smyd1 coding upstream 46571 3158593 ~ 3173052 (+)
spr LOC108429720 coding upstream 63964 3149755 ~ 3155659 (+)
LOC103045876 Rab14,rab14,LOC105889591,LOC103045876,LOC107566859,LOC101069277,LOC103390174,LOC107670386,LOC100710169,LOC107729136 coding upstream 121724 3081905 ~ 3097899 (+)
slc25a45 slc25a45 coding downstream 1966 3228768 ~ 3236878 (+)
cdca5 NA coding downstream 67375 3294177 ~ 3299679 (+)
LOC107197744 NA coding downstream 78340 3305142 ~ 3309078 (+)
LOC103032779 NA coding downstream 84434 3311236 ~ 3328900 (+)
LOC103041291 LOC108427758,LOC108259789,LOC107567283,LOC107758165,LOC107698544 coding downstream 121921 3348723 ~ 3355629 (+)
G330437 exosc2,exos2,LOC106566956 non-coding upstream 72861 3141707 ~ 3146762 (+)
G330432 abl1,LOC106563284 non-coding upstream 114905 3104160 ~ 3104718 (+)
G330414 NA non-coding upstream 203400 3010340 ~ 3016223 (+)
G330383 NA non-coding upstream 408378 2810974 ~ 2811245 (+)
G330379 NA non-coding upstream 444768 2774530 ~ 2774855 (+)
LOC103042413 NA non-coding downstream 45856 3272658 ~ 3275208 (+)
G330513 NA non-coding downstream 50821 3277623 ~ 3277822 (+)
G330554 NA non-coding downstream 83529 3310331 ~ 3310723 (+)
G330575 NA non-coding downstream 115986 3342788 ~ 3343128 (+)
G330626 NA non-coding downstream 380916 3607718 ~ 3609659 (+)
G330426 NA other upstream 139356 3059625 ~ 3080267 (+)
G330088 NA other upstream 1412604 1806403 ~ 1807019 (+)
LOC111191813 NA other upstream 1663621 1555603 ~ 1556002 (+)
mast4 NA other upstream 1753127 1275922 ~ 1466496 (+)
srek1 srek1,LOC107681054,LOC107684347,LOC107730337,LOC107574964,LOC107728210 other upstream 1957488 1201248 ~ 1262135 (+)
LOC103033094 LOC108427157 other downstream 49993 3276795 ~ 3281967 (+)
G330618 NA other downstream 324022 3550824 ~ 3553582 (+)
LOC103031528 pbx3,LOC107725095,LOC107668307,LOC107591489 other downstream 713793 3940595 ~ 4019463 (+)
LOC103037957 lmx1b,LOC108427190,LOC105902565,LOC107654328 other downstream 874991 4101793 ~ 4165773 (+)
G330975 NA other downstream 1594340 4821142 ~ 4822152 (+)

Expression


Co-expression Network