G330575


Basic Information

Item Value
gene id G330575
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 3342788 ~ 3343128 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU455262
agctgatgttccagtgtgattttgaaggactttttcatcttgggccagaccaaatacacatgatctgaagagtactagtcttatactttaagaaaaacctggaaatagcctggcccaagctgattttatactttaaaatgaactggcaacatggaataccgatccataaagcacaatttttttatgtaaagctgatgttccagtgtgattttgaaggactttttcatcttgggccagaacaaatacacatgatctgaagagtactagtcttcttctttaaggaaaacctggaattagcctggcccaagctgattttatactttaaaattaactggcaacat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455262 True 341 lncRNA 0.37 1 3342788 3343128

Neighbor

gene id symbol gene type direction distance location
LOC103032779 NA coding upstream 13888 3311236 ~ 3328900 (+)
LOC107197744 NA coding upstream 33710 3305142 ~ 3309078 (+)
cdca5 NA coding upstream 43109 3294177 ~ 3299679 (+)
slc25a45 slc25a45 coding upstream 105910 3228768 ~ 3236878 (+)
LOC103043336 NA coding upstream 115986 3219623 ~ 3226802 (+)
LOC103041291 LOC108427758,LOC108259789,LOC107567283,LOC107758165,LOC107698544 coding downstream 5595 3348723 ~ 3355629 (+)
LOC103040978 rps6ka4,LOC103040978,LOC108427766,LOC107758164,LOC107567284,LOC107698546,LOC108260350,LOC107702937 coding downstream 16769 3359897 ~ 3384324 (+)
LOC103040256 LOC108427774,LOC108259745,LOC107702935,LOC107755656 coding downstream 253945 3597073 ~ 3626106 (+)
LOC111191789 NA coding downstream 326532 3669660 ~ 3671541 (+)
LOC111191817 NA coding downstream 328455 3671583 ~ 3672710 (+)
G330554 NA non-coding upstream 32065 3310331 ~ 3310723 (+)
G330513 NA non-coding upstream 64966 3277623 ~ 3277822 (+)
LOC103042413 NA non-coding upstream 67580 3272658 ~ 3275208 (+)
G330437 exosc2,exos2,LOC106566956 non-coding upstream 196026 3141707 ~ 3146762 (+)
G330432 abl1,LOC106563284 non-coding upstream 238070 3104160 ~ 3104718 (+)
G330626 NA non-coding downstream 264590 3607718 ~ 3609659 (+)
G330628 NA non-coding downstream 285935 3629063 ~ 3629404 (+)
G330629 NA non-coding downstream 290768 3633896 ~ 3635244 (+)
G330630 NA non-coding downstream 292332 3635460 ~ 3636152 (+)
G330650 NA non-coding downstream 423409 3766537 ~ 3766764 (+)
LOC103033094 LOC108427157 other upstream 60821 3276795 ~ 3281967 (+)
G330426 NA other upstream 262521 3059625 ~ 3080267 (+)
G330088 NA other upstream 1535769 1806403 ~ 1807019 (+)
LOC111191813 NA other upstream 1786786 1555603 ~ 1556002 (+)
mast4 NA other upstream 1876292 1275922 ~ 1466496 (+)
G330618 NA other downstream 207696 3550824 ~ 3553582 (+)
LOC103031528 pbx3,LOC107725095,LOC107668307,LOC107591489 other downstream 597467 3940595 ~ 4019463 (+)
LOC103037957 lmx1b,LOC108427190,LOC105902565,LOC107654328 other downstream 758665 4101793 ~ 4165773 (+)
G330975 NA other downstream 1478014 4821142 ~ 4822152 (+)
tnpo1 tnpo1,LOC106531499 other downstream 1497105 4840233 ~ 4872206 (+)

Expression


Co-expression Network