G330629


Basic Information

Item Value
gene id G330629
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 3633896 ~ 3635244 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU455335
CCTTCCCATTGCGTTCGTTGCAGTACTGTGTGGCTGGCTTTATGTAACTTGGAGGAAGCGCATGCCAGCCTTCACCCTCCCAGCTTGGTACCATCATGTGCTAGACACCCGAGAAGCAGGTGGGAACTGGCCGGGACCAAATATGAGAGGAAAAACTTTGCACTCTGTCTCATAGACAGTGCAAGCACAAGCTGAATTCTGAGTTTTGTAGCAAAGGGCACTTTAGTGACGGCCAAGCCTGGCCGAGCTGTCTTGTACCGCCAGCAAGCTTTCGTCTGATCAACTGTCATGCCAGACCAGCAGTTCTCTGCTTCGCTCctataaacacatatattatacatcATTGCCCACTCATTCCAATAGTACAAGTGGCAGCACACACTTCCTGTATTGTTGGCATATATGGGttgttgactgttgactgttacAGACTCTCTGATTTGTCCTTCATCACTCCCTTGGGTACAGAGCGTTTTAACTGCCTCAGTAATGTAGTTTGTACAGCAGGGCTGTGAGCTCTGTTGGCATGGTGTTGTCATTTATACCTGCAGCACTGAGTATATTTCTGGCCTAGCCTCAACACATGCTTTGCATTAGTAGATCTGCCATGAACAATCTGAAGATGGATCATTGATTGACTGAAGTTATTTAGCCATGACCCTAGTCTTTTTTTAGATATTGCAAAcattactacactgtaaaaataaaaaagttgagaaaactcaaaatttcaATGCAACtgcacaatttattttttttaagtgcaaaataaggcaagctagctaacatactaacgttaccGGGGAGATGATTAACCTTagagatgagctagctaacgttagcagtgagctagctaacacacaaatGGTAtcgggaagagaactaaagttagtgACAAGCTAAATAAACTTAGCAACGCGccaatgttaccagggagagaaccactgttagtgatgagctagctaaccttagtgacaagttagcttcacagtgcactcggaggaaagcgcagtgagtCGGTTCCGACactttgtgctgatcaacatcactctttggagtgatgtggggaaagagtgccatctacccacccagagagagcaaggccaattgtgctctctctcaagGCTCCgatagccgatggcaagctacataaacaggattcgaaccggtgagctcctgatcatagtggcagcacgtAGACCGTTAGACCACTCAGATCCCCCATGTGTGTTTTCACGCTTGACCTTTCTTCCAGATCCTGAACCACTTTCCCAGAGAGACAGCTAATGACTTCTGGGGGATGGCTTGAGAACACCAACACCTGTATGTAAGTTgtgagttgtgaggtg

Function

GO:

id name namespace
GO:0010646 regulation of cell communication biological_process
GO:0023051 regulation of signaling biological_process
GO:0009966 regulation of signal transduction biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455335 True 1349 lncRNA 0.46 1 3633896 3635244

Neighbor

gene id symbol gene type direction distance location
LOC103040256 LOC108427774,LOC108259745,LOC107702935,LOC107755656 coding upstream 7790 3597073 ~ 3626106 (+)
LOC103040978 rps6ka4,LOC103040978,LOC108427766,LOC107758164,LOC107567284,LOC107698546,LOC108260350,LOC107702937 coding upstream 249572 3359897 ~ 3384324 (+)
LOC103041291 LOC108427758,LOC108259789,LOC107567283,LOC107758165,LOC107698544 coding upstream 278267 3348723 ~ 3355629 (+)
LOC103032779 NA coding upstream 304996 3311236 ~ 3328900 (+)
LOC107197744 NA coding upstream 324818 3305142 ~ 3309078 (+)
LOC111191789 NA coding downstream 34416 3669660 ~ 3671541 (+)
LOC111191817 NA coding downstream 36339 3671583 ~ 3672710 (+)
LOC111191790 NA coding downstream 43638 3678882 ~ 3682646 (+)
stip1 stip1,LOC107564074,LOC107674894 coding downstream 54184 3689428 ~ 3704843 (+)
LOC103039629 fermt3,LOC103039629,LOC108259919,LOC107730539,LOC107702932,LOC107564073,LOC107674895 coding downstream 72109 3707353 ~ 3728884 (+)
G330628 NA non-coding upstream 4492 3629063 ~ 3629404 (+)
G330626 NA non-coding upstream 24237 3607718 ~ 3609659 (+)
G330575 NA non-coding upstream 290768 3342788 ~ 3343128 (+)
G330554 NA non-coding upstream 323173 3310331 ~ 3310723 (+)
G330513 NA non-coding upstream 356074 3277623 ~ 3277822 (+)
G330630 NA non-coding downstream 216 3635460 ~ 3636152 (+)
G330650 NA non-coding downstream 131293 3766537 ~ 3766764 (+)
G330657 NA non-coding downstream 193686 3828930 ~ 3829322 (+)
G330658 NA non-coding downstream 194483 3829727 ~ 3829953 (+)
G330659 NA non-coding downstream 233642 3868886 ~ 3869094 (+)
G330618 NA other upstream 80314 3550824 ~ 3553582 (+)
LOC103033094 LOC108427157 other upstream 351929 3276795 ~ 3281967 (+)
G330426 NA other upstream 553629 3059625 ~ 3080267 (+)
G330088 NA other upstream 1826877 1806403 ~ 1807019 (+)
LOC111191813 NA other upstream 2077894 1555603 ~ 1556002 (+)
LOC103031528 pbx3,LOC107725095,LOC107668307,LOC107591489 other downstream 305351 3940595 ~ 4019463 (+)
LOC103037957 lmx1b,LOC108427190,LOC105902565,LOC107654328 other downstream 466549 4101793 ~ 4165773 (+)
G330975 NA other downstream 1185898 4821142 ~ 4822152 (+)
tnpo1 tnpo1,LOC106531499 other downstream 1204989 4840233 ~ 4872206 (+)
LOC103035999 NA other downstream 3035211 6670455 ~ 6679117 (+)

Expression


Co-expression Network