G330658


Basic Information

Item Value
gene id G330658
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 3829727 ~ 3829953 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU455366
GTCAACAGCTATTTTTTGCAATTAGCATTTGTTTAACTCACTTAAAAGAACACATAATGGGATCATCatttacagcaggggtgtcaaactcattttggccgagggccgcattggcatattggctgtcctctgagggccagatgtaacttataaatgtaataaaatgtaaccaaatgtaatataaaatgaatgtaattactccttaatgttaaataactctcaatata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455366 True 227 lncRNA 0.34 1 3829727 3829953

Neighbor

gene id symbol gene type direction distance location
LOC103032476 LOC102306937 coding upstream 1106 3770563 ~ 3828621 (+)
kat5 kat5,kat5b,LOC108427799,LOC108427738 coding upstream 85164 3732329 ~ 3744563 (+)
LOC103039629 fermt3,LOC103039629,LOC108259919,LOC107730539,LOC107702932,LOC107564073,LOC107674895 coding upstream 100843 3707353 ~ 3728884 (+)
stip1 stip1,LOC107564074,LOC107674894 coding upstream 124884 3689428 ~ 3704843 (+)
LOC111191790 NA coding upstream 147081 3678882 ~ 3682646 (+)
LOC103032163 rabl6a,LOC108427817,LOC107725084,LOC105902466 coding downstream 3711 3833664 ~ 3859083 (+)
cunh9orf172 cunh9orf172,zmp:0000000794,LOC107725135,LOC107666534,LOC107557588,LOC107715543,LOC107654331 coding downstream 48625 3878578 ~ 3905087 (+)
mvb12b mvb12b,LOC107557586,LOC107654329,LOC107591487,LOC107666228 coding downstream 220797 4050750 ~ 4078888 (+)
zbtb43 zbtb43,LOC106562887 coding downstream 412828 4242781 ~ 4247367 (+)
LOC103027981 ralgps1,LOC107557582,LOC107666038,LOC107725136,LOC102794060 coding downstream 426356 4256309 ~ 4475977 (+)
G330657 NA non-coding upstream 405 3828930 ~ 3829322 (+)
G330650 NA non-coding upstream 62963 3766537 ~ 3766764 (+)
G330630 NA non-coding upstream 193575 3635460 ~ 3636152 (+)
G330629 NA non-coding upstream 194483 3633896 ~ 3635244 (+)
G330628 NA non-coding upstream 200323 3629063 ~ 3629404 (+)
G330659 NA non-coding downstream 38933 3868886 ~ 3869094 (+)
G330662 NA non-coding downstream 50964 3880917 ~ 3881138 (+)
G330660 NA non-coding downstream 76970 3906923 ~ 3907749 (+)
G330678 NA non-coding downstream 105026 3934979 ~ 3941967 (+)
G330686 NA non-coding downstream 250739 4080692 ~ 4080902 (+)
G330618 NA other upstream 276145 3550824 ~ 3553582 (+)
LOC103033094 LOC108427157 other upstream 547760 3276795 ~ 3281967 (+)
G330426 NA other upstream 749460 3059625 ~ 3080267 (+)
G330088 NA other upstream 2022708 1806403 ~ 1807019 (+)
LOC111191813 NA other upstream 2273725 1555603 ~ 1556002 (+)
LOC103031528 pbx3,LOC107725095,LOC107668307,LOC107591489 other downstream 110642 3940595 ~ 4019463 (+)
LOC103037957 lmx1b,LOC108427190,LOC105902565,LOC107654328 other downstream 271840 4101793 ~ 4165773 (+)
G330975 NA other downstream 991189 4821142 ~ 4822152 (+)
tnpo1 tnpo1,LOC106531499 other downstream 1010280 4840233 ~ 4872206 (+)
LOC103035999 NA other downstream 2840502 6670455 ~ 6679117 (+)

Expression


Co-expression Network