G330630


Basic Information

Item Value
gene id G330630
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 3635460 ~ 3636152 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU455336
tttgacatctaaaagctctgcatcttttttgttatttcagctatttctcattttcggcaaataagtgctctaaatgacatttttatttgaaatttgggagaaatgttgggcgtagtttatagaataaaacaacaatgttcattttaatcgaacatattcctataaatagcaaaatcagagaaactgattcagaaacagaagtggtctcttatatttctGAGCACATAACATGTCAACTGTCGATAAATTGTACAACCTTGGATTAGAGCATATGGGGATAGTTGTTTCCTCGTGGGAttttttttcatcctttttGAAACCATCTGCAGACTCTGCACCTACTGCCGCCTTGGACCAGCAGTTGTTCCACCTGCAGCCCATTAACGCAGATGTCTctctgcacacaaacacaaacacacacacacacacagattcccAAATTCACCCttacccacacacaaacacacacacccacacccacacaagCGCTGCTGTGCTGTCTCACCCCTGAGACAATGCTCTCACATCCGCACTCTCCAAAAATAACACCATTTTCCTTGTTCCCTCCACACGGAATAATGTCACTGTCACACTGCACTCGCAAACAGGTTCACCTGAGGTCTGCACGCTGCCTCTGCCTCtccctgttctgttttttttttgttctgtatttctctttttcctcctcAATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU455336 True 693 lncRNA 0.41 1 3635460 3636152

Neighbor

gene id symbol gene type direction distance location
LOC103040256 LOC108427774,LOC108259745,LOC107702935,LOC107755656 coding upstream 9354 3597073 ~ 3626106 (+)
LOC103040978 rps6ka4,LOC103040978,LOC108427766,LOC107758164,LOC107567284,LOC107698546,LOC108260350,LOC107702937 coding upstream 251136 3359897 ~ 3384324 (+)
LOC103041291 LOC108427758,LOC108259789,LOC107567283,LOC107758165,LOC107698544 coding upstream 279831 3348723 ~ 3355629 (+)
LOC103032779 NA coding upstream 306560 3311236 ~ 3328900 (+)
LOC107197744 NA coding upstream 326382 3305142 ~ 3309078 (+)
LOC111191789 NA coding downstream 33508 3669660 ~ 3671541 (+)
LOC111191817 NA coding downstream 35431 3671583 ~ 3672710 (+)
LOC111191790 NA coding downstream 42730 3678882 ~ 3682646 (+)
stip1 stip1,LOC107564074,LOC107674894 coding downstream 53276 3689428 ~ 3704843 (+)
LOC103039629 fermt3,LOC103039629,LOC108259919,LOC107730539,LOC107702932,LOC107564073,LOC107674895 coding downstream 71201 3707353 ~ 3728884 (+)
G330629 NA non-coding upstream 216 3633896 ~ 3635244 (+)
G330628 NA non-coding upstream 6056 3629063 ~ 3629404 (+)
G330626 NA non-coding upstream 25801 3607718 ~ 3609659 (+)
G330575 NA non-coding upstream 292332 3342788 ~ 3343128 (+)
G330554 NA non-coding upstream 324737 3310331 ~ 3310723 (+)
G330650 NA non-coding downstream 130385 3766537 ~ 3766764 (+)
G330657 NA non-coding downstream 192778 3828930 ~ 3829322 (+)
G330658 NA non-coding downstream 193575 3829727 ~ 3829953 (+)
G330659 NA non-coding downstream 232734 3868886 ~ 3869094 (+)
G330662 NA non-coding downstream 244765 3880917 ~ 3881138 (+)
G330618 NA other upstream 81878 3550824 ~ 3553582 (+)
LOC103033094 LOC108427157 other upstream 353493 3276795 ~ 3281967 (+)
G330426 NA other upstream 555193 3059625 ~ 3080267 (+)
G330088 NA other upstream 1828441 1806403 ~ 1807019 (+)
LOC111191813 NA other upstream 2079458 1555603 ~ 1556002 (+)
LOC103031528 pbx3,LOC107725095,LOC107668307,LOC107591489 other downstream 304443 3940595 ~ 4019463 (+)
LOC103037957 lmx1b,LOC108427190,LOC105902565,LOC107654328 other downstream 465641 4101793 ~ 4165773 (+)
G330975 NA other downstream 1184990 4821142 ~ 4822152 (+)
tnpo1 tnpo1,LOC106531499 other downstream 1204081 4840233 ~ 4872206 (+)
LOC103035999 NA other downstream 3034303 6670455 ~ 6679117 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) LOC110510000 LOC106563458 misc NC_048593.1 CM023247.2 30050188 ~ 30107503 (+)