RNA id: TU455336


Basic Information

Item Value
RNA id TU455336
length 693
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G330630
representative True

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 3635460 ~ 3636152 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

tttgacatctaaaagctctgcatcttttttgttatttcagctatttctcattttcggcaaataagtgctctaaatgacatttttatttgaaatttgggagaaatgttgggcgtagtttatagaataaaacaacaatgttcattttaatcgaacatattcctataaatagcaaaatcagagaaactgattcagaaacagaagtggtctcttatatttctGAGCACATAACATGTCAACTGTCGATAAATTGTACAACCTTGGATTAGAGCATATGGGGATAGTTGTTTCCTCGTGGGAttttttttcatcctttttGAAACCATCTGCAGACTCTGCACCTACTGCCGCCTTGGACCAGCAGTTGTTCCACCTGCAGCCCATTAACGCAGATGTCTctctgcacacaaacacaaacacacacacacacacagattcccAAATTCACCCttacccacacacaaacacacacacccacacccacacaagCGCTGCTGTGCTGTCTCACCCCTGAGACAATGCTCTCACATCCGCACTCTCCAAAAATAACACCATTTTCCTTGTTCCCTCCACACGGAATAATGTCACTGTCACACTGCACTCGCAAACAGGTTCACCTGAGGTCTGCACGCTGCCTCTGCCTCtccctgttctgttttttttttgttctgtatttctctttttcctcctcAATCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455335 lncRNA upstream 216 3633896 ~ 3635244 (+) True G330629
TU455334 lncRNA upstream 6056 3629063 ~ 3629404 (+) True G330628
TU455332 lncRNA upstream 25801 3607718 ~ 3609659 (+) True G330626
TU455262 lncRNA upstream 292332 3342788 ~ 3343128 (+) True G330575
TU455241 lncRNA upstream 324737 3310331 ~ 3310723 (+) True G330554
TU455357 lncRNA downstream 130385 3766537 ~ 3766764 (+) True G330650
TU455365 lncRNA downstream 192778 3828930 ~ 3829322 (+) True G330657
TU455366 lncRNA downstream 193575 3829727 ~ 3829953 (+) True G330658
TU455367 lncRNA downstream 232734 3868886 ~ 3869094 (+) True G330659
TU455370 lncRNA downstream 244765 3880917 ~ 3881138 (+) True G330662
XM_022667856.1 mRNA upstream 9354 3597073 ~ 3626106 (+) True LOC103040256
XM_022667857.1 mRNA upstream 9354 3597073 ~ 3626106 (+) False LOC103040256
XM_007253975.3 mRNA upstream 251136 3359897 ~ 3384324 (+) True LOC103040978
XM_007253976.3 mRNA upstream 279831 3348723 ~ 3355629 (+) True LOC103041291
XM_015607059.2 mRNA upstream 306560 3311236 ~ 3328900 (+) True LOC103032779
XM_022667745.1 mRNA downstream 33508 3669660 ~ 3671541 (+) True LOC111191789
XM_022667746.1 mRNA downstream 42730 3678882 ~ 3682646 (+) True LOC111191790
XM_007253972.3 mRNA downstream 53276 3689428 ~ 3704843 (+) True stip1
XM_007253971.3 mRNA downstream 71201 3707353 ~ 3728884 (+) True LOC103039629
XM_007253970.3 mRNA downstream 96177 3732329 ~ 3744563 (+) True kat5
TU455323 other upstream 81878 3550824 ~ 3553582 (+) True G330618
TU455180 other upstream 353539 3279077 ~ 3281921 (+) False LOC103033094
TU455067 other upstream 555193 3059625 ~ 3080267 (+) True G330426
TU454604 other upstream 1828441 1806403 ~ 1807019 (+) True G330088
XR_002649682.1 other upstream 2079458 1555646 ~ 1556002 (+) False LOC111191813
XR_002649685.1 other downstream 35431 3671583 ~ 3672710 (+) True LOC111191817
XR_002649672.1 other downstream 304445 3940597 ~ 4010556 (+) False LOC103031528
XR_002649671.1 other downstream 304446 3940598 ~ 4010556 (+) False LOC103031528
TU455745 other downstream 1184990 4821142 ~ 4822152 (+) True G330975
XR_455653.2 other downstream 1204085 4840237 ~ 4868321 (+) False tnpo1

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU2484266 True 2232 lncRNA 0.40 2 NC_048593.1 30105248 ~ 30107503 (+)