RNA id: TU455357


Basic Information

Item Value
RNA id TU455357
length 228
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G330650
representative True

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 3766537 ~ 3766764 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

gagtaggtgctctttgaagagctctgtcttcaggagtttattaaagatagtgagatattctcctgatctggtagtggaaggtagttagttagaggtgttaggagagtaagtgctctttgaagagctctgtcttcaggagtttattaaagatagcgagagattctcctgatctggtagtggaaggtagtttgttccaccattggggaactctgtatgagaacagtctgg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455336 lncRNA upstream 130385 3635460 ~ 3636152 (+) True G330630
TU455335 lncRNA upstream 131293 3633896 ~ 3635244 (+) True G330629
TU455334 lncRNA upstream 137133 3629063 ~ 3629404 (+) True G330628
TU455332 lncRNA upstream 156878 3607718 ~ 3609659 (+) True G330626
TU455262 lncRNA upstream 423409 3342788 ~ 3343128 (+) True G330575
TU455365 lncRNA downstream 62166 3828930 ~ 3829322 (+) True G330657
TU455366 lncRNA downstream 62963 3829727 ~ 3829953 (+) True G330658
TU455367 lncRNA downstream 102122 3868886 ~ 3869094 (+) True G330659
TU455370 lncRNA downstream 114153 3880917 ~ 3881138 (+) True G330662
TU455368 lncRNA downstream 140159 3906923 ~ 3907749 (+) True G330660
XM_007253970.3 mRNA upstream 21974 3732329 ~ 3744563 (+) True kat5
XM_007253971.3 mRNA upstream 37653 3707353 ~ 3728884 (+) True LOC103039629
XM_007253972.3 mRNA upstream 61694 3689428 ~ 3704843 (+) True stip1
XM_022667746.1 mRNA upstream 83891 3678882 ~ 3682646 (+) True LOC111191790
XM_022667745.1 mRNA upstream 94996 3669660 ~ 3671541 (+) True LOC111191789
XM_022667740.1 mRNA downstream 3799 3770563 ~ 3828621 (+) True LOC103032476
XM_022667750.1 mRNA downstream 66900 3833664 ~ 3859083 (+) False LOC103032163
XM_022667752.1 mRNA downstream 66900 3833664 ~ 3859083 (+) False LOC103032163
XM_022667749.1 mRNA downstream 66901 3833665 ~ 3859083 (+) False LOC103032163
XM_022667751.1 mRNA downstream 67127 3833891 ~ 3859083 (+) True LOC103032163
XR_002649685.1 other upstream 93827 3671583 ~ 3672710 (+) True LOC111191817
TU455323 other upstream 212955 3550824 ~ 3553582 (+) True G330618
TU455180 other upstream 484616 3279077 ~ 3281921 (+) False LOC103033094
TU455067 other upstream 686270 3059625 ~ 3080267 (+) True G330426
TU454604 other upstream 1959518 1806403 ~ 1807019 (+) True G330088
XR_002649672.1 other downstream 173833 3940597 ~ 4010556 (+) False LOC103031528
XR_002649671.1 other downstream 173834 3940598 ~ 4010556 (+) False LOC103031528
TU455745 other downstream 1054378 4821142 ~ 4822152 (+) True G330975
XR_455653.2 other downstream 1073473 4840237 ~ 4868321 (+) False tnpo1
XR_002649681.1 other downstream 2903691 6670455 ~ 6679117 (+) True LOC103035999

Expression Profile