RNA id: XM_007253972.3


Basic Information

Item Value
RNA id XM_007253972.3
length 3893
RNA type mRNA
GC content 0.45
exon number 14
gene id stip1
representative True

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 3689428 ~ 3704843 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

GTCATATTGAGCGGTGGGCGGCGCGTCTCCACTGTCGTCTCACAGTAGTTTCTGGAACCTCATGGTTACACCATGGAGAAAGTATCTCAGCTAAAAGACCAGGGCAATAAGGCGCTGAGCGCTGGAAACATTGATGAAGCCGTTCGTTGCTACACGGAAGCCCTGGTTTTAGACCCATCCAACCATGTCCTTTTCAGCAACCGCTCTGCTGCCTACGCCAAAAAGGGTGACTACGATAATGCCCTGAAAGATGCCTGCCAGACCATTAAAATCAAGCCAGACTGGGGCAAGGGTTACTCACGGAAGGCAGCAGCTTTGGAGTTTCTGGGGAAATTTGAGGATGCCAAAGCAACCTATCAGGAGGGTATCAGACATGAGCCATCCAATCAGCAACTGAAAGAGGGGCTTCAGAATATTGAGGCCCGACTATCAGACAAGAAGATGATGAACCCGTTTGCAATCCCCAACTTATATGAGAAATTGGAGGGGGACCCTCGGACACGGGCACTGCTGACTGACCCCAGTTACAgagagctgctggagcagctgcgCACTAAGCCGTCTGAACTCGGCACGAGGTTGCAGGATCCACGTGTGATGACTACTCTCTCAGTGTTACTGGGGCTGGACCTCGTTGGCatggatgaagaggaggagtcaactccaccacctccacctaAACCTAAAGAGACAGCTCCGCCTCCTCCCAAAGAGGAAGACTTGCCAGAGAACAAGAGATTGGCACTGAAGGAGAAGGAGCTTGGCAATGCAGCTTACAAAAAGAAGGACTTTGCCACTGCCCTCAAACACTATGAAGAGGCGTTTAAGCATGACCCCACCAACATGACCTATCTGTCAAATCAGGCCGctgTGTTCTTTGAGAAAGGAGAGTTTGACAAGTGTAGAGAATTTTGTGAGAAAGCCATTGAAGTGGGACGTGAAAATCGTGAGGACTACAGACAAATTGCCAAGGCCTACGCCAGGATTGGCAACTCCTACTTCAAGCAGGATCAGTATAAGGAAGCCATTCAGTTCTTTAACAAAAGTCTGACAGAACACCGCACTCCTGAGGTGCTGAAAAAGTGCCAGCAGGCAGAGAAGATAGTAAAGGAGCAGGAAAAACTGGCCTACATCAACCCAGACTTGGCACTAGAGGAGAAAAACAAAGGCAATGAAGCCTTCCAGAAAGgtgattATCCTGTAGCTATGAAGCACTACACAGAGGCCATCAAGAGGAACCCCAATGACGCCAAGCTCTTCAGCAACAGAGCAGCCTGCTACACCAAACTACTGGAGTTCCAGCTGGCACTTAAGGACTGTGAGGAGTGCATCAATCTAGACCCTGCATTCATTAAAGGATACACACGCAAGGCAGCAGCACTGGAGGCAATGAAGGACTTTTCCAAAGCCATGGATGCCTACCAGAAAGCTCTGGAGCTGGATTCCAACTCCAAGGAGGCCACAGAGGGGATGCAGCGCTGCATGGTGAGTCAGGCAGTGCGGAACGACAGCCCAGAGGATGTAAAGCGGAGGGCCATGGCTGATCCGGAGGTGCAACAGATCATGTCTGACCCTGCCATGCGCATGATCTTGGAGCAGATGCAGAAAGACCCCCAGGCCCTTAGCGATCACCTGAAGAACCCAGTAATTGCTCAgaagattcagaaactgatagACGTTGGCCTCATAGCCATCCGGTAATCACAGCGAAGGCAGAGGAGAAGCAGGGCTACCACCATCCAGATCAACACCGCCACAAGACCACAGAGGGAAGATGATGCCATTCCAAAATCGACAAACTCTAGCTCACCGAAATGTGCACCCATTTCTGTGCTCCACATCTATATGTGATagggttttctgtttttatttcaatgtaaggccttaattagacattcaTTAAACATGTTATATTAAACATGTAATGCGCAAtactagattttattttttttagaatactCCAGTACCAATGACCATTGATTCATGACACATGAAGTTTTGGGTGAAGAGAACCTGTGGATGATCAGGTTTGTTACAGTGTAATCTCACAAATGTAAGCACTGGAGAAAAACTCAACTGTGTAGTACCAGCTTTGATATTCAGCCAACTTCAGTTTTGACCCTCTGACTCTTTCAGTATAAACCTCACTCAGTATGGCGTGTTGTAAGGGCATTCCTGGATGCAGTATGAATTGCGCAACTATTTTGAGATGCTTGTTGCTATCATTTTATGTGTGCGTTCTGGTTCTAATTTCTGAATGTTGTTGCCTGTGTGGGGGACTGCTAGTCTTCGATAAAGCTGGTTGCCACTTCTCACAGAAATTTCAGGGTTATCAGACATCTCAGGGTAAGAGTGCATACCTGCGTTGAGTTCCATGCTGGCAGTGTAATCATATTCATGGTGAAATTACCAAGATATGGAGTCTGGATCGGGTACAAACTCGCGGTTGAATTGAACAGTAAAGTTTGATTGCTTTCACCTTTTCGCGCTCAGCAGGAGAAAGCTTGCCTCACTGCAAATCCTGCAGCTCCAGCCTATCTCTGTAGGCACTCTATTCCCAGCAGGAAATATCTTTAGGCAGCATTTAGCTGGGCACAGTGGGTAAGAAAGCAAATGTAAGAAAGTGATCCTTAATCAGCACTCTTAATTTGAGAAGTCAGATGTGTGTTtatcccccccccaaaaaaaactttttcatatAATGTTAGTTTTAATTGAATACTGTCTTTTTAGGCTTTGCTATAGTTCAGTCATGCCACCTGTGCTTAACAAGATGATAAAAAGCTTTGCAAAGCTTAATGTACTGAAACTGTGAGTTAGAAATTACAGAAATTCCCCTTTTCTATCATAGTAATGTTGCAACACTGTTGACCACCTCCTCCTTTCTAATCTCACTTTCCATTTTATCAGCTCTCCTCAACATATGGAGCCCTTTTTCTGCATACATTGTAATTTCCACCCTGTTCCACCACCTAGCAGGTATTATGTGGCTgtgggctggatatttctggttggtggactattgtCTTAAAAACTGAGAATGATCTACCACCCagataatacctgctctgtggtggaaCTGTAGGTGAGAACAGggtaaaataagataataaactATGCAGATGGAAGTCAGTTTCttattacaaaactacaaagtgcttctaTATGCTCAGTGTAGCTGAAAGAATGAACCATGTAcgtagaaacaagaaggtggtcaGAAGTAGTTGTTAAAGTATGAAAACATAACTGTTGTTCAGTGTTGTTTTGGTACATTATGCAATGCTAAGCTTCTCCACATAAGCATTTAGGAACTCTTCTTGGAAAGGCATCTTCAAGAATTCAAAAGTGTGGCATTGGTTTACAGGGTGCCTTCAAGTAGCACAGATTGTGGGCCAGTCTTCAGTTTATCCTGTTCATTGCTTATTCCCAGAGTTCCCAGTGTCTTGAAGACAAGCCTGCCATCTGAGTGACCTGAAAGCTCCCCTTGCTTATCTATCTCGTTTTTCCGTCTTCAGTGCGAAAGAGCAGAATGGGACTTAAGCCATGTGAAAATCTTCGGCTGCTGTCACGCTCCATGTCTTTTCACTTCAATAAACTCTTTGACTGACATCCACGCCGGGGCATCCAGATTGCGTCCAGTCGAATGGCTCTTCACAATTGCAGTTTGCTCAAAGATGGCAGGACAGAAATAACTGCCACTCAGTGCGTAGCCTGGGGTCACTTCTTCAAATAAACCTTAAGTTCCTGTATTGTAGAAAAAGCTTACTGTAACCTGCAAGTAGTTTTATGATGTGTAGAGAGGAAGCACATCACAACAGAAAGTTTTATTGGCATGACACTTGGAAATGGAGAATTAAGAGCGTGAAAAATTAAACTCAAACTGAAACAGA

Function

GO: NA

KEGG:

id description
K09553 STIP1; stress-induced-phosphoprotein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455336 lncRNA upstream 53276 3635460 ~ 3636152 (+) True G330630
TU455335 lncRNA upstream 54184 3633896 ~ 3635244 (+) True G330629
TU455334 lncRNA upstream 60024 3629063 ~ 3629404 (+) True G330628
TU455332 lncRNA upstream 79769 3607718 ~ 3609659 (+) True G330626
TU455262 lncRNA upstream 346300 3342788 ~ 3343128 (+) True G330575
TU455357 lncRNA downstream 61694 3766537 ~ 3766764 (+) True G330650
TU455365 lncRNA downstream 124087 3828930 ~ 3829322 (+) True G330657
TU455366 lncRNA downstream 124884 3829727 ~ 3829953 (+) True G330658
TU455367 lncRNA downstream 164043 3868886 ~ 3869094 (+) True G330659
TU455370 lncRNA downstream 176074 3880917 ~ 3881138 (+) True G330662
XM_022667746.1 mRNA upstream 6782 3678882 ~ 3682646 (+) True LOC111191790
XM_022667745.1 mRNA upstream 17887 3669660 ~ 3671541 (+) True LOC111191789
XM_022667856.1 mRNA upstream 63322 3597073 ~ 3626106 (+) True LOC103040256
XM_022667857.1 mRNA upstream 63322 3597073 ~ 3626106 (+) False LOC103040256
XM_007253975.3 mRNA upstream 305104 3359897 ~ 3384324 (+) True LOC103040978
XM_007253971.3 mRNA downstream 2510 3707353 ~ 3728884 (+) True LOC103039629
XM_007253970.3 mRNA downstream 27486 3732329 ~ 3744563 (+) True kat5
XM_022667740.1 mRNA downstream 65720 3770563 ~ 3828621 (+) True LOC103032476
XM_022667750.1 mRNA downstream 128821 3833664 ~ 3859083 (+) False LOC103032163
XM_022667752.1 mRNA downstream 128821 3833664 ~ 3859083 (+) False LOC103032163
XR_002649685.1 other upstream 16718 3671583 ~ 3672710 (+) True LOC111191817
TU455323 other upstream 135846 3550824 ~ 3553582 (+) True G330618
TU455180 other upstream 407507 3279077 ~ 3281921 (+) False LOC103033094
TU455067 other upstream 609161 3059625 ~ 3080267 (+) True G330426
TU454604 other upstream 1882409 1806403 ~ 1807019 (+) True G330088
XR_002649672.1 other downstream 235754 3940597 ~ 4010556 (+) False LOC103031528
XR_002649671.1 other downstream 235755 3940598 ~ 4010556 (+) False LOC103031528
TU455745 other downstream 1116299 4821142 ~ 4822152 (+) True G330975
XR_455653.2 other downstream 1135394 4840237 ~ 4868321 (+) False tnpo1
XR_002649681.1 other downstream 2965612 6670455 ~ 6679117 (+) True LOC103035999

Expression Profile