RNA id: XM_022667746.1


Basic Information

Item Value
RNA id XM_022667746.1
length 789
RNA type mRNA
GC content 0.45
exon number 3
gene id LOC111191790
representative True

Chromosome Information

Item Value
chromosome id NW_019172913.1
NCBI id APWO02000139.1
chromosome length 7081347
location 3678882 ~ 3682646 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome
species mexican tetra
(Astyanax mexicanus)

Sequence

CAAAGCTATGCTGAGCTTGCCAAATCTACACTTGCAAGGATCATTGTTTTTAACCGGAGACGTGCTGGAGAGGTCTCAAAAATGCATCTTAAATGCTTTCAAGACAGGGATAAGACTCTTCTGCATGAAGATGTTGCATTTGGCCTTTCCAATTTCGAAAAGAAACTTTGCAGTCATTTCTGCAGAGTTGAGATCAAAGGTAAAAGAGGCAGAAAGGTCGCTGTCCTTCTCACACCAAGCATGGTTGATGCTCTGACACTTTTGGTCAGCTCAAGACTACAATGTGGAGTTCCAGATGCAAACAACTTCTTGTTCGCCAGACCCAGCTGTCAAAGTTATTACAGAGGCCAGGACTGTCTGAGGATTTATGCAGTTCAGTGTGGTGCACAAAATCCGGAACATCTCCGATCAACACACTTGCGGAAACATGTGGCTACTCTCTCACAAGTCCTCAATCTGAAAAACAATGAATTGGATCAAGTTGCAGACTTCTTGGGACATGACATTCGTGTACACCGGGAGTACTATAGACTCCCCGAAGCAACAACTCAGCTGGCTAAGATATCAAAACTCCTGCTGGCTATGGAAAAAGGATGTCTTCCCGATCTGCAGGGCAAATCACTTGATGACATTGAGATTGAAGATGAGATTAACCCAACTGATGACAGCGATGGCAGTGAACCTGATAATGATGCTGCAGATGATGCCATGAGTGCCCCAAGACAGACTGagaCACAGAAGACCCAGCCAATGCAAGCCCCAGCATTGCTGGTGGGGTTTTTTGTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455336 lncRNA upstream 42730 3635460 ~ 3636152 (+) True G330630
TU455335 lncRNA upstream 43638 3633896 ~ 3635244 (+) True G330629
TU455334 lncRNA upstream 49478 3629063 ~ 3629404 (+) True G330628
TU455332 lncRNA upstream 69223 3607718 ~ 3609659 (+) True G330626
TU455262 lncRNA upstream 335754 3342788 ~ 3343128 (+) True G330575
TU455357 lncRNA downstream 83891 3766537 ~ 3766764 (+) True G330650
TU455365 lncRNA downstream 146284 3828930 ~ 3829322 (+) True G330657
TU455366 lncRNA downstream 147081 3829727 ~ 3829953 (+) True G330658
TU455367 lncRNA downstream 186240 3868886 ~ 3869094 (+) True G330659
TU455370 lncRNA downstream 198271 3880917 ~ 3881138 (+) True G330662
XM_022667745.1 mRNA upstream 7341 3669660 ~ 3671541 (+) True LOC111191789
XM_022667856.1 mRNA upstream 52776 3597073 ~ 3626106 (+) True LOC103040256
XM_022667857.1 mRNA upstream 52776 3597073 ~ 3626106 (+) False LOC103040256
XM_007253975.3 mRNA upstream 294558 3359897 ~ 3384324 (+) True LOC103040978
XM_007253976.3 mRNA upstream 323253 3348723 ~ 3355629 (+) True LOC103041291
XM_007253972.3 mRNA downstream 6782 3689428 ~ 3704843 (+) True stip1
XM_007253971.3 mRNA downstream 24707 3707353 ~ 3728884 (+) True LOC103039629
XM_007253970.3 mRNA downstream 49683 3732329 ~ 3744563 (+) True kat5
XM_022667740.1 mRNA downstream 87917 3770563 ~ 3828621 (+) True LOC103032476
XM_022667750.1 mRNA downstream 151018 3833664 ~ 3859083 (+) False LOC103032163
XR_002649685.1 other upstream 6172 3671583 ~ 3672710 (+) True LOC111191817
TU455323 other upstream 125300 3550824 ~ 3553582 (+) True G330618
TU455180 other upstream 396961 3279077 ~ 3281921 (+) False LOC103033094
TU455067 other upstream 598615 3059625 ~ 3080267 (+) True G330426
TU454604 other upstream 1871863 1806403 ~ 1807019 (+) True G330088
XR_002649672.1 other downstream 257951 3940597 ~ 4010556 (+) False LOC103031528
XR_002649671.1 other downstream 257952 3940598 ~ 4010556 (+) False LOC103031528
TU455745 other downstream 1138496 4821142 ~ 4822152 (+) True G330975
XR_455653.2 other downstream 1157591 4840237 ~ 4868321 (+) False tnpo1
XR_002649681.1 other downstream 2987809 6670455 ~ 6679117 (+) True LOC103035999

Expression Profile