RNA id: TU2484266


Basic Information

Item Value
RNA id TU2484266
length 2232
lncRNA type sense_over
GC content 0.40
exon number 2
gene id LOC110510000
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30050188 ~ 30107503 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTTGATTGTAATTTTAGTTTACTTCTTGAATTGACTGCCTTCATTtcgaattgagcccaaccctgctACTCAGTCCACTTCCCCTACACCCAGCAGCACTACAAATGTAAATGAATCAGCACTTACAGCTACATAACAGGCAGTGAATGAGGGGATAATGACAGACAGGGAGacctagagagacacagaggaaaaGAGAGCGACAGATTCAAATGCAGAAGACAGAAATGATGGCTCTGGAACGACGGAGTTAACCCATGCATAAACCTGTTTGTCATAGCCTGCTACTCCACATTGCTTAAATATTCTCCATTGCTTGTTTATCACTTTGCTGTTTCCATGGTGGAAACCAATCGTGATTCCTTGGCTGTTTTGTCTGTTAGGATTTCCTAGTAGGTTGACTGTCAAACAATATGTCAAAGGAgcattcattttattttattttgaatacaacaTGTGAAACTGGAACAAAAGATGCTGTTGGTGGCAGGTTTTTATTTTAGAAAATATTGataaacataattttttttttttttagtttattCATCTTATGCTGTTACCATGACATCCACTAATTTCCACATTGAGATACCATCCACACCTGTCTCTACAGGAAAAACGAAATACTGAGCTTTTTAAAAGTGTGCAAATTTTTTGTGGTAGGGTCCCTATTGAGTGTACACTTTTAGAAATCAATTCTCAGAGAGTggtaataatacagtataatctATCACATTACAGCAACAATGTCGCCATTTCACCATATGTAAGAGCACAAATAActgttgaaatatatatattttattttttaaagtaaccACACGTATGGGTAATAGTGAGGGGAAGAATCATATCACAGGTAACCAGCTTACATACAGAAACCAGGCCTGCATGTTTTActgtaactccctctctctcctataaAACATAGTGTATTTATTTGGTATGCAGCTATTACGGCAGGTAGCATAGTGCTTAGAGGGTTGCACCAGTTACCGcgaggtcgctggttcaaatgaGCCATCAAGGTGAAaaatgagcaaggcacttaaccctaatttgctttactatggctgaccctgtaaaacaccaaatttcactgcacctatgtgataatatatatattttttaaattattgtttCTAGTTGAGCTTGCATGCCTAGATGTgtatgtttgagagagagagagagagagagagagagagagagaaagagagagagagaaagagagagagagagagagaaagagagagagagagagagagagtaccgtAGTAAGTATGCAGTTTGTGTGCATCACAGTCATCGCAGGGAGCACTTACGGTaattttgtttcatttttttaGACCATCTGCCGATTTTACTTCTCTGTCGACTCGACCAGCAGttggtgtttgtttgtgtgtcagatTGTGTGGCTCCTGCCGACTCAGACCAGCAGTTGTTCCACCTGCAGCCCATTAACACAGATGTCTTCCCTTCCCTGCTGCGACTGCCCTGGCTCCACCGAAAGGCCCTGTTTGCATAGTCTgtgtttctaaaaaaaaaaaaaaaacactcctctCTGTGCTCAGATCGATGCTAGCTGCACAATAACAGAGAGCGAAAAACAGGGTCAGCTGGGGATCCGTCACCCAGCACACTTTCTAAAGCTTTCTGGGTGAAATGGTgctcatcattattatcattatcatcaatTATTGCACATTCCCATCCACATTCAGTGCGCCCTCTTCATGCCCCTTCTCTTAGTAGAGTGCCCATCACCCAACCCACACAAGAGTTGGAAGCCTTTGGTATGCTGAGTGGATCCAGGTTTCAGGCGCCAACTTGTGCCACTTTCACATCATGTCGGAAACTTGGGAACTCTTGAGATTTCCGACTTGCTTATTCATTGTAGAAAGATGATACAGAATCAACCAACAGGAAGTTCTACGCAAATAACTTACGTTAATTTTAACTCTAAGGTCCCGAGTTTCCAACATGACATGAACACGGCATAACACACGAAATTCAAGGCAATGGTCTGTGGTTTTATGCTTTAAAAATCCttttaatgttatttttttgtCTACCCCTCCATATTGTTCCTGTGTTTTTTGTAAGTTGCTGCTGTTGAAACATCGCTCTCTCTTCCTTTGTTGGACTCTGTGTTATACTGAGAAAAAATGAACTATTTTGTATAAAAGATGTCTCTTTTCAATGTGATTAAAGGGGAAATGTGCAAAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484299 lncRNA upstream 13210 30091833 ~ 30092038 (+) True G2173664
TU2484267 lncRNA upstream 29297 30050628 ~ 30075951 (+) False LOC110510000
TU2484255 lncRNA upstream 50897 30013013 ~ 30054351 (+) True G2173622
TU2484276 lncRNA upstream 56847 30047972 ~ 30048401 (+) True G2173641
TU2484254 lncRNA upstream 93772 30011250 ~ 30011476 (+) True G2173621
TU2484330 lncRNA downstream 8228 30115731 ~ 30115984 (+) True G2173683
TU2484312 lncRNA downstream 10543 30118046 ~ 30118555 (+) True G2173677
TU2484332 lncRNA downstream 12515 30120018 ~ 30120355 (+) True G2173685
TU2484309 lncRNA downstream 20985 30128488 ~ 30128781 (+) True G2173674
TU2484322 lncRNA downstream 110778 30218281 ~ 30222113 (+) False zmp:0000001168
XM_036967378.1 mRNA upstream 97787 29978474 ~ 30007461 (+) False LOC110509999
XM_021590273.2 mRNA upstream 127657 29973566 ~ 29977591 (+) True LOC110509374
XM_021591258.2 mRNA upstream 149055 29952492 ~ 29956193 (+) False LOC110509998
XM_021591256.2 mRNA upstream 164263 29940307 ~ 29940985 (+) True LOC110509996
XM_036967422.1 mRNA upstream 179571 29920501 ~ 29925677 (+) True LOC110509993
XM_021591264.2 mRNA downstream 13014 30120517 ~ 30127527 (+) True LOC110510005
XM_021591261.2 mRNA downstream 22015 30129518 ~ 30135940 (+) True LOC110510002
XM_021591263.2 mRNA downstream 31840 30139343 ~ 30147325 (+) True LOC110510004
XM_036968320.1 mRNA downstream 68001 30175504 ~ 30217982 (+) False zmp:0000001168
XM_036968322.1 mRNA downstream 68002 30175505 ~ 30215841 (+) False zmp:0000001168
TU2484191 other upstream 151438 29952537 ~ 29953810 (+) True LOC110509998
TU2484176 other upstream 208969 29894094 ~ 29896279 (+) True G2173551
TU2484185 other upstream 233931 29869138 ~ 29871317 (+) False LOC110509988
TU2483968 other upstream 443014 29652569 ~ 29662234 (+) True LOC110509970
TU2483674 other upstream 517776 29585594 ~ 29587472 (+) False G2173114
TU2484310 other downstream 29220 30136723 ~ 30137320 (+) True G2173675
TU2484414 other downstream 212145 30319648 ~ 30323615 (+) True G2173754
TU2484421 other downstream 229349 30336852 ~ 30340691 (+) False G2173761
TU2484506 other downstream 356439 30463942 ~ 30468124 (+) True G2173841
TU2484723 other downstream 715111 30822614 ~ 30824144 (+) True LOC110510022

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
mexican tetra (Astyanax mexicanus) TU455336 True 693 lncRNA 0.41 1 NW_019172913.1 3635460 ~ 3636152 (+)