RNA id: TU2484414


Basic Information

Item Value
RNA id TU2484414
length 3968
RNA type TUCP
GC content 0.45
exon number 1
gene id G2173754
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30319648 ~ 30323615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCGGACAGTTGTGTAGAAATGaattgtaaataatgtatttttggAGTCACTTTATTGTGAATAATATAGAATGTTTCTGAGCATTTGTACATTAATTTGGaagctaccatgattatggataatcatgaatgaatcgtgaataatgatgagtgagaaagttacagagtaGAGTTgtacttttgactactttaatacactaagtgaatttgtccaaatacttatgataccttcaaaatggggggactacatacaaagttctttcatttctaaacggtaaaacatactgtatatatatgaaaAATACCCTAAATAAAAAGGTGACATTTTGTTCCATCgcctcatataaaacatttgatctcaaatccaaaatggtgGAGTATAGAACCAAATtaaaagttttagcttcactgtccaaataaatatgtaGGGAAGTGGAGCCTCATATCTGGCGATTCAGGTATTGGCAGAAGCCAGTGCAACTATGATAAACGGAGTGATGACGACAAAGGGTTTTGGCTCTGTATGCTGCAACCACTTTCTAAAACAGCCAACACTTACTTGGAGGTCTAGACTAGTAGCTAGATACAATAGGAAACATGCCAAAATAACTTGAGTTCAGTTGTTGTAGGAGGCATACCATGCATATCACAACATAAAGAGTAACACCAAAATATGTTACCATAGTCATTAGGTGCAGCATACAACTGAGTAGATTATAGAAATCTGGATTTATTGCAGTTGCAGGAGCCAGTGAAGGTTAGTAGTGTTGATGTCAGTCTGTCAACAGGTGCTGTCCCAAACGCTGCAGGAGAGCCTGACACAATGTTCTGCACCGTACAGCTCCCCTGTCACTGAGTGGCTGGCTGCAGATCTGTCAGCAGAGCTCCAGAGGAAACAGACACAGGCTTACGTAACACCATTCTGGCCTGGCCATGGTCAGCAGGACAGACTGCACTGCAGGCTCTGGCTCCAGCTCCAGACAGACTGCACTGCAGCACATCTTACcatatcctttctctctctctctctcgcagagTCCAAACAGACTGCACTGCAGCACCTCTAatcacatcctctctctctctctctctctgcaacataTGTCTATTAATATAGTCCTCTTCTCAACATGTCAGCTATGGAGCCCAAGTTATTTTCCATCTAATTTAGTAATCACTTGAGCATGCACAGGgtgcacaggaggctgctgaggggaggatgactcataataatgtctggaattgagtgaatggaatggtatcaaacacgtggAAACCATTTATTTGATGTGTTCGATACCAATCCatttattccgttccagccattactatgattttctcctgagtggcgcagcggtctaaggcactgcatctcagttttagaggtgtcactacagactctggtttgatcccgggctgtatcacaacatgccgtgatcgggagtcccataggacggcgcacaattagcccaatgtcgtccgggttaagggagggtttgagCAGTCATtagttcattttttaaaaatgagcCCATTCCCTTCAATTAAGGTGCTACTGGACGCCTGTGACAGGGTGGGTATGTATGGAGTGAGAACATTATATTTTGATAGATTTGATCTGATGAGTTGATATCCAAAAGTAAACAGAATTATAGAGCAGTTTAAAAGCTGTAATTAACGTAGATATATGCAGTTACAATGCCAACAGGTTTATAGTGCTTTAGTAAGTGTGTGAAAGTATCAAGACATTTGATCTAATATGAGATTAATCAAATATAATACTATAACGATATTGTTTAGCGTTATGCATTAATGTAATGTATGTTAGCCTACAGGAGGACATGTAATGTATAGAACCCCTGTTGGGTACATTATAAATGGGTTAACGGGTATCCAGCGTTTTTTGCCATTCTTAAGGTAGACCTGCACATCATTGGTCCACCGTTATCAAAGAACCAACGTATGTTCTAAATGATCTATCATTTCACTTTTGAAATCATTTGTACAATGTTGAAGTGAATCAGTGCACCTTTGGGTGCAAATAATAAAGCATTTCTTATTGGGTTTGTGAAGAATCATTAACCTGTTATCATTATCCAGTTGATTGCTacattgttgttgatgtaatactgaaatagaaaaatatataccCCATGCAGCAATTGGTGTTCCAGCAACTCTACGCTGTATTCTACTGCAAACACTGAAGTATCTTGTCACTAGAATTCAAGATAACATTGGTAATAGTCTGATTGTGAACTTTTCTGTGTTGGTACAGAGATAGTTGGAGCAACACAAGGACTTGGATGGCTACAGCGGTGAGAATCTCTTTATGAGCAGTCTCAGGTTGTGAATCAAAACGTGTCCAACATCTCAATGACCAGAGCCTGAGAGCCAGTAAAAACAGAGCGCTTTGCTCTGTAGATCTGCTGAAAGGACGACAGATATGGAACTGCACTCTCCAACACTCAGTGTCTCTCCTGATACAAAGTTATAACTTTCACAATCTTGCAGTAAAAATGAACAAAAAGCTGAAGACAGAGACTCAGGGAGGTGACCTCCTCTCCCACTCTGGCTCTCTGTCCTTGCAGAGATGACATCATCCCTGTTGTACAGTTCATCTTTCCGTAAGTGTGTGTCTTTGAGAACAATATCCCCAATCAAGTAGAGTCTGAATAGAATGTCTGTTCCAGAATAGCTTCATAAGCTGGAGAAATCTGTATGACACGCGCAGCAAACTGTGATCTTCGGAGTACGTAGAGTAGTCTACAGCTCAGGTGCAGTAAAAAAATGATCTAACACTGACCTTCAAGTTTACCATACCCTTCCCACTGACATATTAGCCCAAACAGATATGCTGACCTCAGTTCCTGACCAGCAGTGTATTCTTTCCCCAATCTCTTCATGTACTCTTTGGAGGAAGGGCAAAGGAGATTTAACAGTCAGCTTTTGGCTCATGTCACCTCATTAGACAACACTTCCTACATTAAGTAATTCAAATATGGAAAAGTGTAGAAAGATATTCAATATCAATTAAAACACTAACAGAAACTGATGTTAAGTTCCAGAAAAAAAGCACTTAATATGAGCAAACTACTGTACAAACCCAGCCTTGTGATCAAGCAAGGCCTGGTTGAGGTCAGAACCTCCTGTGTTACACTACGAGGGACAGAGGACCGAGGGAGGAGGACTTCCCATGGTCAGGTGTAGAGCTCTTGCCGTCCTCCCTGCAGACAGGTTCCGTTGAGGCCATTGAGGCGCTGGCGGTCCATGATCTGCAGCACGTCATCCAGGATGGAGGGGCCCAGGTCCAGGTGCAGGGAGAGCAGGGAGCCTGCATTGGACAAGTAGGGACGCTCCTGAACCCGGTCATCCAGATAGGGGTCCTGGATACACACATCGTTGTCTGATGAAAACCTGGGAGAGGGTGGGCAGAACTGGGAAGTCCTGCTGGGAGTCTGGGCCAAGGGGGAGTCCAGACCTGGGTGATGGGTCATCAGGATCTTGTCATCCAGGTGCAGTCGAGGAGGTTTGGGTGGGGGGGCTGCGTTCTGAGGCGGGTGGGAGACAGTGGGGGGTGCAGAGGTGACGGGCAGGGTGATGGCCTGCAACCCTCCAATGACGGGCAGAGAGAGGGCGTTCTTCAGAAGGGGGGAGCTCTCTGAGGAGGCTGTGTGTCCGCTGATGCTGGCAGTATGGCTGAACTGGAAGGGCTCTGCGTACATGGAAGAGCGCTGGGATAGGCAGTCGCCCTGCTGCCCAGGGAGCAGGTGGAACTTCCCCTCCAGGAAGGACAGGTCCCCAAATAGGTTGTCCTCCCCCCCGCCGCTGCCGATGTGGATGGTGTGGCGGAAGTCCCCAAGCGGAGGACTGATCATGTCCGAGGAGAGGATGTCCCGCAGCTTTTCTTTCTTACCCTTCCTGCTCCGCCGCTTCAGGTATATGGGCGCCTTGGTGGACATGTCTGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484401 lncRNA upstream 9913 30299613 ~ 30309735 (+) False G2173744
TU2484407 lncRNA upstream 12641 30304213 ~ 30307007 (+) True G2173747
TU2484394 lncRNA upstream 16638 30299699 ~ 30303010 (+) False G2173744
TU2484397 lncRNA upstream 16638 30299699 ~ 30303010 (+) False G2173744
TU2484399 lncRNA upstream 16638 30299699 ~ 30303010 (+) True G2173744
TU2484422 lncRNA downstream 13237 30336852 ~ 30355090 (+) True G2173761
TU2484497 lncRNA downstream 121007 30444622 ~ 30444904 (+) True G2173832
TU2484505 lncRNA downstream 134559 30458174 ~ 30463021 (+) True G2173840
TU2484508 lncRNA downstream 144713 30468328 ~ 30468909 (+) True G2173843
TU2484535 lncRNA downstream 188475 30512090 ~ 30512374 (+) True G2173869
XR_005040397.1 mRNA upstream 28445 30264990 ~ 30291203 (+) False LOC110510009
XM_036967571.1 mRNA upstream 28445 30264992 ~ 30291203 (+) False LOC110510009
XM_036967573.1 mRNA upstream 28446 30266787 ~ 30291202 (+) False LOC110510009
XM_036967572.1 mRNA upstream 28446 30266788 ~ 30291202 (+) True LOC110510009
XM_036968316.1 mRNA upstream 97536 30175505 ~ 30222112 (+) False zmp:0000001168
XM_021591288.2 mRNA downstream 329077 30652692 ~ 30669474 (+) False LOC110510020
XM_021591289.2 mRNA downstream 329079 30652694 ~ 30669474 (+) True LOC110510020
XR_005040536.1 mRNA downstream 368346 30691961 ~ 30778743 (+) False LOC110509412
XM_036968345.1 mRNA downstream 368347 30691962 ~ 30780818 (+) False LOC110509412
XM_036968346.1 mRNA downstream 368347 30691962 ~ 30780818 (+) False LOC110509412
TU2484310 other upstream 182328 30136723 ~ 30137320 (+) True G2173675
TU2484191 other upstream 365838 29952537 ~ 29953810 (+) True LOC110509998
TU2484176 other upstream 423369 29894094 ~ 29896279 (+) True G2173551
TU2484185 other upstream 448331 29869138 ~ 29871317 (+) False LOC110509988
TU2483968 other upstream 657414 29652569 ~ 29662234 (+) True LOC110509970
TU2484421 other downstream 13237 30336852 ~ 30340691 (+) False G2173761
TU2484506 other downstream 140327 30463942 ~ 30468124 (+) True G2173841
TU2484723 other downstream 498999 30822614 ~ 30824144 (+) True LOC110510022
TU2485681 other downstream 994222 31317837 ~ 31318377 (+) True G2174785
TU2486199 other downstream 1286929 31610544 ~ 31611469 (+) True G2175233

Expression Profile