RNA id: TU2484535


Basic Information

Item Value
RNA id TU2484535
length 285
lncRNA type intronic
GC content 0.50
exon number 1
gene id G2173869
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30512090 ~ 30512374 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aatgtcatatggttaagatttcccttcactggatctaAGGGGCCAAGCCCAAACCACTGAAACCAGCCCCAGaccattcctcctccaccaaagaTTACAGTTGGCACTAGGGATTGGGGCAGGTatcattctcctggcatcccccaaacccagattggtctgttggactgccagaatacgaagtgtgattcatcactccagagaacacgtttccactgctccagagtccaaaagCTGTATACCTCtctagccaacgcttggcattgcgcatggtgatcttaggct

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484508 lncRNA upstream 43181 30468328 ~ 30468909 (+) True G2173843
TU2484505 lncRNA upstream 49069 30458174 ~ 30463021 (+) True G2173840
TU2484497 lncRNA upstream 67186 30444622 ~ 30444904 (+) True G2173832
TU2484422 lncRNA upstream 157000 30336852 ~ 30355090 (+) True G2173761
TU2484407 lncRNA upstream 205083 30304213 ~ 30307007 (+) True G2173747
TU2484537 lncRNA downstream 1717 30514091 ~ 30514328 (+) True G2173871
TU2484538 lncRNA downstream 2587 30514961 ~ 30515185 (+) True G2173872
TU2484545 lncRNA downstream 11038 30523412 ~ 30523629 (+) True G2173878
TU2484552 lncRNA downstream 14767 30527141 ~ 30529621 (+) False G2173882
TU2484553 lncRNA downstream 14767 30527141 ~ 30529486 (+) False G2173882
XR_005040397.1 mRNA upstream 220887 30264990 ~ 30291203 (+) False LOC110510009
XM_036967571.1 mRNA upstream 220887 30264992 ~ 30291203 (+) False LOC110510009
XM_036967573.1 mRNA upstream 220888 30266787 ~ 30291202 (+) False LOC110510009
XM_036967572.1 mRNA upstream 220888 30266788 ~ 30291202 (+) True LOC110510009
XM_036968323.1 mRNA upstream 289978 30175505 ~ 30222112 (+) False zmp:0000001168
XM_021591288.2 mRNA downstream 140318 30652692 ~ 30669474 (+) False LOC110510020
XM_021591289.2 mRNA downstream 140320 30652694 ~ 30669474 (+) True LOC110510020
XR_005040536.1 mRNA downstream 179587 30691961 ~ 30778743 (+) False LOC110509412
XM_036968345.1 mRNA downstream 179588 30691962 ~ 30780818 (+) False LOC110509412
XM_036968346.1 mRNA downstream 179588 30691962 ~ 30780818 (+) False LOC110509412
TU2484506 other upstream 43966 30463942 ~ 30468124 (+) True G2173841
TU2484421 other upstream 171399 30336852 ~ 30340691 (+) False G2173761
TU2484414 other upstream 188475 30319648 ~ 30323615 (+) True G2173754
TU2484310 other upstream 374770 30136723 ~ 30137320 (+) True G2173675
TU2484191 other upstream 558280 29952537 ~ 29953810 (+) True LOC110509998
TU2484723 other downstream 310240 30822614 ~ 30824144 (+) True LOC110510022
TU2485681 other downstream 805463 31317837 ~ 31318377 (+) True G2174785
TU2486199 other downstream 1098170 31610544 ~ 31611469 (+) True G2175233
TU2486351 other downstream 1388607 31900981 ~ 31901236 (+) True LOC110509422
TU2486438 other downstream 1524673 32037047 ~ 32037736 (+) True G2175413

Expression Profile