G2173841 (LOC106563447)


Basic Information

Item Value
gene id G2173841
gene name LOC106563447
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30463942 ~ 30468124 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2484506
ccaatacaatttgatttgatttgatgttgttgGGCCTGAGGTACGTACATGAGTGGTAGACGGGACAGGGGTAGATCTCACAGTGGTCCCCCCAGCCCACGCCGATGGAACAGCAGCACTCCTGCTTGGTGACGTTGGTGGCCAGGACACTGTCACAGAACACTGTGTCATCCAGGTTCAGGTAACACTCCTTCTTATCCTCCATGTCCACCTCAATCTCCTCACAGCTGTGCTTGTCCTCAGACAGAATGAAGCCgtctttgcacacacacacataggagcCCTGTCTGTTCTCACACACACCATGAGGCTGGCACAGACCCCTGTCTATCGCACACTCATCTATGTCTTGGCACCGCCTCCCTCCGACAAGCATGTAGCCCTTCTGACATTCACAGCGATAGGAGCCCATGCTGTTGATACAGCGCCCCCTCTGGCAGTTAGAGGGACGCTCGCATTCATTTATATCTTCACAATGGCTGCCCTCCTGAGTGCGCTGGTATCCTGGGTAGCACTGGCACTGGAAGGAGCCTTCTGTGTTGACACAGCGCCCGTTGGCACACAGTCTTTCATCCTCACACTCGTCAATGtCTCTGCAGCCTTTGCTGTCTGCAGCTGGGAGGAAGCCTTCATTACAGAGGCAGCGGTAGGTTCCTGGCAGGTTCTCACAGCGCCCGTTGGGACACACCCCGCGCTTCTGGCACtcattgacatCGTAGCAGACACCACCCTGGGCCTGATGACCAGAGAAGCAGGGAACACACTCATAGGAGCCTGGAGTGTTCTCACACTGCTCATTGGGACAGCTGCTGGGGTCCAGACACTCATTTATATCTTCACAGGCTGGCTGGCGTTGGGACTTGCTCCTGAAGCCTTTGTGACAA

Function

NR:

description
latent-transforming growth factor beta-binding protein 3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2484506 True 884 TUCP 0.55 7 30463942 30468124

Neighbor

gene id symbol gene type direction distance location
LOC110510009 LOC106563450 coding upstream 172739 30264990 ~ 30291203 (+)
zmp:0000001168 LOC106563451 coding upstream 241830 30175504 ~ 30222113 (+)
LOC110510004 LOC106563454 coding upstream 316617 30139343 ~ 30147325 (+)
LOC110510002 LOC106563456 coding upstream 328002 30129518 ~ 30135940 (+)
LOC110510005 LOC106563457 coding upstream 336415 30120517 ~ 30127527 (+)
LOC110510020 LOC106563438 coding downstream 184568 30652692 ~ 30669474 (+)
LOC110509412 LOC106563437 coding downstream 223837 30691961 ~ 30780818 (+)
il13ra2b il13ra2b coding downstream 318620 30786744 ~ 30804819 (+)
LOC110510022 LOC106563433 coding downstream 349721 30817845 ~ 30824144 (+)
LOC110510024 LOC106563431 coding downstream 453364 30921488 ~ 31017638 (+)
G2173840 LOC106563447 non-coding upstream 921 30458174 ~ 30463021 (+)
G2173832 NA non-coding upstream 19038 30444622 ~ 30444904 (+)
G2173761 LOC106563448 non-coding upstream 108852 30336852 ~ 30355090 (+)
G2173744 NA non-coding upstream 154207 30299613 ~ 30309735 (+)
G2173747 NA non-coding upstream 156935 30304213 ~ 30307007 (+)
G2173843 LOC106563447 non-coding downstream 204 30468328 ~ 30468909 (+)
G2173869 NA non-coding downstream 43966 30512090 ~ 30512374 (+)
G2173871 NA non-coding downstream 45967 30514091 ~ 30514328 (+)
G2173872 NA non-coding downstream 46837 30514961 ~ 30515185 (+)
G2173878 NA non-coding downstream 55288 30523412 ~ 30523629 (+)
G2173754 LOC106563449 other upstream 140327 30319648 ~ 30323615 (+)
G2173675 NA other upstream 326622 30136723 ~ 30137320 (+)
LOC110509998 LOC106563463 other upstream 510132 29952492 ~ 29956193 (+)
G2173551 vps51 other upstream 567663 29894094 ~ 29896279 (+)
G2174785 NA other downstream 849713 31317837 ~ 31318377 (+)
G2175233 psmb6 other downstream 1142420 31610544 ~ 31611469 (+)
LOC110509422 LOC106563560 other downstream 1432857 31820484 ~ 31908546 (+)
G2175413 NA other downstream 1568923 32037047 ~ 32037736 (+)

Expression


Co-expression Network