G2173754 (LOC106563449)


Basic Information

Item Value
gene id G2173754
gene name LOC106563449
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30319648 ~ 30323615 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2484414
CCGGACAGTTGTGTAGAAATGaattgtaaataatgtatttttggAGTCACTTTATTGTGAATAATATAGAATGTTTCTGAGCATTTGTACATTAATTTGGaagctaccatgattatggataatcatgaatgaatcgtgaataatgatgagtgagaaagttacagagtaGAGTTgtacttttgactactttaatacactaagtgaatttgtccaaatacttatgataccttcaaaatggggggactacatacaaagttctttcatttctaaacggtaaaacatactgtatatatatgaaaAATACCCTAAATAAAAAGGTGACATTTTGTTCCATCgcctcatataaaacatttgatctcaaatccaaaatggtgGAGTATAGAACCAAATtaaaagttttagcttcactgtccaaataaatatgtaGGGAAGTGGAGCCTCATATCTGGCGATTCAGGTATTGGCAGAAGCCAGTGCAACTATGATAAACGGAGTGATGACGACAAAGGGTTTTGGCTCTGTATGCTGCAACCACTTTCTAAAACAGCCAACACTTACTTGGAGGTCTAGACTAGTAGCTAGATACAATAGGAAACATGCCAAAATAACTTGAGTTCAGTTGTTGTAGGAGGCATACCATGCATATCACAACATAAAGAGTAACACCAAAATATGTTACCATAGTCATTAGGTGCAGCATACAACTGAGTAGATTATAGAAATCTGGATTTATTGCAGTTGCAGGAGCCAGTGAAGGTTAGTAGTGTTGATGTCAGTCTGTCAACAGGTGCTGTCCCAAACGCTGCAGGAGAGCCTGACACAATGTTCTGCACCGTACAGCTCCCCTGTCACTGAGTGGCTGGCTGCAGATCTGTCAGCAGAGCTCCAGAGGAAACAGACACAGGCTTACGTAACACCATTCTGGCCTGGCCATGGTCAGCAGGACAGACTGCACTGCAGGCTCTGGCTCCAGCTCCAGACAGACTGCACTGCAGCACATCTTACcatatcctttctctctctctctctcgcagagTCCAAACAGACTGCACTGCAGCACCTCTAatcacatcctctctctctctctctctctgcaacataTGTCTATTAATATAGTCCTCTTCTCAACATGTCAGCTATGGAGCCCAAGTTATTTTCCATCTAATTTAGTAATCACTTGAGCATGCACAGGgtgcacaggaggctgctgaggggaggatgactcataataatgtctggaattgagtgaatggaatggtatcaaacacgtggAAACCATTTATTTGATGTGTTCGATACCAATCCatttattccgttccagccattactatgattttctcctgagtggcgcagcggtctaaggcactgcatctcagttttagaggtgtcactacagactctggtttgatcccgggctgtatcacaacatgccgtgatcgggagtcccataggacggcgcacaattagcccaatgtcgtccgggttaagggagggtttgagCAGTCATtagttcattttttaaaaatgagcCCATTCCCTTCAATTAAGGTGCTACTGGACGCCTGTGACAGGGTGGGTATGTATGGAGTGAGAACATTATATTTTGATAGATTTGATCTGATGAGTTGATATCCAAAAGTAAACAGAATTATAGAGCAGTTTAAAAGCTGTAATTAACGTAGATATATGCAGTTACAATGCCAACAGGTTTATAGTGCTTTAGTAAGTGTGTGAAAGTATCAAGACATTTGATCTAATATGAGATTAATCAAATATAATACTATAACGATATTGTTTAGCGTTATGCATTAATGTAATGTATGTTAGCCTACAGGAGGACATGTAATGTATAGAACCCCTGTTGGGTACATTATAAATGGGTTAACGGGTATCCAGCGTTTTTTGCCATTCTTAAGGTAGACCTGCACATCATTGGTCCACCGTTATCAAAGAACCAACGTATGTTCTAAATGATCTATCATTTCACTTTTGAAATCATTTGTACAATGTTGAAGTGAATCAGTGCACCTTTGGGTGCAAATAATAAAGCATTTCTTATTGGGTTTGTGAAGAATCATTAACCTGTTATCATTATCCAGTTGATTGCTacattgttgttgatgtaatactgaaatagaaaaatatataccCCATGCAGCAATTGGTGTTCCAGCAACTCTACGCTGTATTCTACTGCAAACACTGAAGTATCTTGTCACTAGAATTCAAGATAACATTGGTAATAGTCTGATTGTGAACTTTTCTGTGTTGGTACAGAGATAGTTGGAGCAACACAAGGACTTGGATGGCTACAGCGGTGAGAATCTCTTTATGAGCAGTCTCAGGTTGTGAATCAAAACGTGTCCAACATCTCAATGACCAGAGCCTGAGAGCCAGTAAAAACAGAGCGCTTTGCTCTGTAGATCTGCTGAAAGGACGACAGATATGGAACTGCACTCTCCAACACTCAGTGTCTCTCCTGATACAAAGTTATAACTTTCACAATCTTGCAGTAAAAATGAACAAAAAGCTGAAGACAGAGACTCAGGGAGGTGACCTCCTCTCCCACTCTGGCTCTCTGTCCTTGCAGAGATGACATCATCCCTGTTGTACAGTTCATCTTTCCGTAAGTGTGTGTCTTTGAGAACAATATCCCCAATCAAGTAGAGTCTGAATAGAATGTCTGTTCCAGAATAGCTTCATAAGCTGGAGAAATCTGTATGACACGCGCAGCAAACTGTGATCTTCGGAGTACGTAGAGTAGTCTACAGCTCAGGTGCAGTAAAAAAATGATCTAACACTGACCTTCAAGTTTACCATACCCTTCCCACTGACATATTAGCCCAAACAGATATGCTGACCTCAGTTCCTGACCAGCAGTGTATTCTTTCCCCAATCTCTTCATGTACTCTTTGGAGGAAGGGCAAAGGAGATTTAACAGTCAGCTTTTGGCTCATGTCACCTCATTAGACAACACTTCCTACATTAAGTAATTCAAATATGGAAAAGTGTAGAAAGATATTCAATATCAATTAAAACACTAACAGAAACTGATGTTAAGTTCCAGAAAAAAAGCACTTAATATGAGCAAACTACTGTACAAACCCAGCCTTGTGATCAAGCAAGGCCTGGTTGAGGTCAGAACCTCCTGTGTTACACTACGAGGGACAGAGGACCGAGGGAGGAGGACTTCCCATGGTCAGGTGTAGAGCTCTTGCCGTCCTCCCTGCAGACAGGTTCCGTTGAGGCCATTGAGGCGCTGGCGGTCCATGATCTGCAGCACGTCATCCAGGATGGAGGGGCCCAGGTCCAGGTGCAGGGAGAGCAGGGAGCCTGCATTGGACAAGTAGGGACGCTCCTGAACCCGGTCATCCAGATAGGGGTCCTGGATACACACATCGTTGTCTGATGAAAACCTGGGAGAGGGTGGGCAGAACTGGGAAGTCCTGCTGGGAGTCTGGGCCAAGGGGGAGTCCAGACCTGGGTGATGGGTCATCAGGATCTTGTCATCCAGGTGCAGTCGAGGAGGTTTGGGTGGGGGGGCTGCGTTCTGAGGCGGGTGGGAGACAGTGGGGGGTGCAGAGGTGACGGGCAGGGTGATGGCCTGCAACCCTCCAATGACGGGCAGAGAGAGGGCGTTCTTCAGAAGGGGGGAGCTCTCTGAGGAGGCTGTGTGTCCGCTGATGCTGGCAGTATGGCTGAACTGGAAGGGCTCTGCGTACATGGAAGAGCGCTGGGATAGGCAGTCGCCCTGCTGCCCAGGGAGCAGGTGGAACTTCCCCTCCAGGAAGGACAGGTCCCCAAATAGGTTGTCCTCCCCCCCGCCGCTGCCGATGTGGATGGTGTGGCGGAAGTCCCCAAGCGGAGGACTGATCATGTCCGAGGAGAGGATGTCCCGCAGCTTTTCTTTCTTACCCTTCCTGCTCCGCCGCTTCAGGTATATGGGCGCCTTGGTGGACATGTCTGGA

Function

NR:

description
cdc42 effector protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2484414 True 3968 TUCP 0.45 1 30319648 30323615

Neighbor

gene id symbol gene type direction distance location
LOC110510009 LOC106563450 coding upstream 28445 30264990 ~ 30291203 (+)
zmp:0000001168 LOC106563451 coding upstream 97536 30175504 ~ 30222113 (+)
LOC110510004 LOC106563454 coding upstream 172323 30139343 ~ 30147325 (+)
LOC110510002 LOC106563456 coding upstream 183708 30129518 ~ 30135940 (+)
LOC110510005 LOC106563457 coding upstream 192121 30120517 ~ 30127527 (+)
LOC110510020 LOC106563438 coding downstream 329077 30652692 ~ 30669474 (+)
LOC110509412 LOC106563437 coding downstream 368346 30691961 ~ 30780818 (+)
il13ra2b il13ra2b coding downstream 463129 30786744 ~ 30804819 (+)
LOC110510022 LOC106563433 coding downstream 494230 30817845 ~ 30824144 (+)
LOC110510024 LOC106563431 coding downstream 597873 30921488 ~ 31017638 (+)
G2173744 NA non-coding upstream 9913 30299613 ~ 30309735 (+)
G2173747 NA non-coding upstream 12641 30304213 ~ 30307007 (+)
G2173738 NA non-coding upstream 34962 30282006 ~ 30284686 (+)
G2173737 NA non-coding upstream 39996 30278618 ~ 30279652 (+)
G2173761 LOC106563448 non-coding downstream 13237 30336852 ~ 30355090 (+)
G2173832 NA non-coding downstream 121007 30444622 ~ 30444904 (+)
G2173840 LOC106563447 non-coding downstream 134559 30458174 ~ 30463021 (+)
G2173843 LOC106563447 non-coding downstream 144713 30468328 ~ 30468909 (+)
G2173869 NA non-coding downstream 188475 30512090 ~ 30512374 (+)
G2173675 NA other upstream 182328 30136723 ~ 30137320 (+)
LOC110509998 LOC106563463 other upstream 365838 29952492 ~ 29956193 (+)
G2173551 vps51 other upstream 423369 29894094 ~ 29896279 (+)
LOC110509988 tmem261 other upstream 448331 29869091 ~ 29874237 (+)
LOC110509970 LOC106563483 other upstream 657414 29652518 ~ 29662236 (+)
G2173841 LOC106563447 other downstream 140327 30463942 ~ 30468124 (+)
G2174785 NA other downstream 994222 31317837 ~ 31318377 (+)
G2175233 psmb6 other downstream 1286929 31610544 ~ 31611469 (+)

Expression


Co-expression Network