LOC110510002 (LOC106563456)


Basic Information

Item Value
gene id LOC110510002
gene name LOC106563456
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30129518 ~ 30135940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591261.2
GCTCTCTTGACATTTGCTCACACACAGGATGAGACCGCAGCAACTAAGACGTTGTGAGAGAGACGGGAGGAAGTAACAGGCAGATTTCACAAGCTGCAAAGAAAGGCAGAGGCAGAGGGCACCTATTGTTTGACTGAAGAAAATTAGTTTGGGACTTACAACTAGTATGGCTGCCTGGGATCTGTCTGTGACAGTGGAGGAGCTTGGCCCAGAGGCCCCACCCCTCAAAGTTAGCGTGACCTCAGACCTGCACATTGGTGGCGTCATTCTCAAAATTGTGGAGAAGACACAGATAAAGAAGGATTGGTCAGACCATGCCCTGTGGTGGGAGCAGAAGCAGCAGTGGCTGCTCCGACCATCCTGGACCCTTGAGAAGTATGAGATCCATGCCGACGCTCGCCTGAGCCTCACCCCCCAGCACAAGCCTCTAAGACTGGGGCTACCCAACGGGACCACCCTGAGGCTTCAGGCCTGCTTCTCTCGTCCAGTCTTCCAAACGGTCATGGGGGTCTGTCATCTGCTGAACCTGCGTCACCCAGAGGAGCTGTCGTTGTTACGGCCAATGGAGGtgaagaaaaagaaaaaagacaAGGAGGCAGAAGAGGAAGTAGTATACGATCTAACAGGCCTTCGGACCTCATCAGGTCCAGCTCACACCCTGTCCAATGGCATGCCTATGCACTTTGCTGACTCACTGCAGACTGAGGCTGTGTATAAGATGTTGTCTGTCAGCCTACCTGCACCTGCTCCTGAGACTATCACCAAGATGCCCCGTCCAACCAGCCTTATGGACAAGGCACAAGTTCACAGCAGATGGCTGGATTCGTCTCGTTCTCTGCTccaacagggagtgcaggagcaTGACAGGCTGCTACTACGCTTCAAATACTACTGCTTCCATGACCTGGATCCCAAGTATGATGCGGTCCGTCTGACCCAGCTGTATGAGCAGGCTCGCTGGGCCATCTTGCTGGAGGATGTTGACTGCACAGAGGAAGAGATGATGCTCTTTGCTGCCCTTCAGTACCACATTGGTAAGGTGTCTCTGTCAGAGCCCCAGCCGATGACATCATGTCCTGCCATGGATGATCTTGACTCTGCCCTTCAGTGTTTGGAGGTGAAGATGGAAGCGGAGGAGAGTATCACTGCGGACATGCTGGAAACAATGACGGTAGCACCAGAGCTGCAGGACTACTTGAAAATCTTCAGACCAAAAAGACTGACACTAAAGGGCTATAAACAGTTCTGGTTCGCattcaacaacacatccatctCCTACTACAAGAGTAAAGAGGAGAGCCTCAAGGAACCCATTCAGCAGATGAACCTCAAAGGCTGTGAGGTGGCCCCAGACGTTAGTGTGGCTGGTCAGAAGTTCTGCATCAGACTGCTGATCCCTGGCGCTGAGGGCATGAACGAAGTCTACCTACGCTGTGAGAATGAGCTGCAGTACAGCAGGTGGATGGCAGCTTGCCGTTTAGCCTCCAAAGGGAAGACACTAGCAGACAGCTCTTTCTCTAGTGAGGTGCAGAATATCCAGTCTTTCCTGGCCATGCAGCGAACCAACCCTGGGGCCAATATTGCTCAGACTGATGACAGCATCAACACATACAGCCTTGTATCCCCACGCTACCACAAAAAGTACAAAGCCAAACAGCTAACTCCACGCATCCTGGAAGCCTATCAGAATGTGGCCCAGCTCCCTCTAACAGATGCCCTCCTCAGGTTTCTTCAAATCTGGCAGGGTCTACCTGACTTTGGGGTGTCCTATTTTGTGGTGAGGTTTAAGGGATGCCGTAAAGATGAAGTCCTTGGGGTCACCAACAACCGTCTCATCCGCATTGACCTCAGCATAGGAGATGTGGTGAAGACATGGAGATACAACACCATGAGGCAGTGGAATGTCAACTGGGATATTCAACAGATGGCCATTGAGTTCAATGGCAATGTGAACATTGCCTTCAGCTGTGTGACTGCAACCTGCAAGATTGTGCACGAGTACATTGGGGGCTACATCTTCATGGCCACACGCACCAAAGAGCAGGCCGAGGTGTTGAACCAGGAGCTCTTCTTCAAGCTGACTGGTGGTCATGAAGCCATCTAAACATCCATGAATATCTGTATCTCAGAATGCACCTCTTCATGGTTTTACGTTACATGGACATGCGGTCAGTTGAACCATTTCCACAATTGTATTGTTATTACTCGACCATACAACATGTTTTTCTGACGTTATAAAAGTCAATTTAGTTTTCAAATGTTTGTGTATTTTTgtattgaaatgtattcaataggTTACATCAATAATATTAAATGAATGGCAAGCAAAAAAAATGGCTTATTATTTGctctgttgttgtggttgttaaAAATAATAAGATGTAAAAGGTGCACAGTTTTTTTTGTGGCTGACGGGGGAAACTTTTTGCCCACACTGCAGATGGCTATGTTGGTTTTGTTATTGTCATTAttcagatttttcagggggttgcagcagcaccctcagcacccctacttcccatgTCTAAGAGGCAGGCCTACATTCACAGTCAGACAAAGGCTGTTTTAGGCTTATCTCACAGGACTGAATAATTCAGCTTTAATAGTTTCAATTTTTATTAGTCGTACATTGAGCTCCAaagtatgttttgttgttgttttggctctgtactcccacactttggatttgaaatgatagaAGGACTTTGAGGTTAAAgttcagactgtcagctttaaattgagggtattttcatcaaAATCTGGTGAAACGTTTAGAAATTAAAGCACTTtttgtacttagtcccctccatTTTAGTGGgctaaaagtattgggacaaattcccTTATATGTGTATCAAAGTAGTAAAAAGTGAA

Function

NR:

description
fermitin family homolog 3-like

GO: NA

KEGG:

id description
K17084 FERMT3, KIND3; kindlin 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591261.2 True 2874 mRNA 0.47 15 30129518 30135940

Neighbor

gene id symbol gene type direction distance location
LOC110510005 LOC106563457 coding upstream 1991 30120517 ~ 30127527 (+)
LOC110510000 LOC106563458 coding upstream 22017 30050188 ~ 30107503 (+)
LOC110509999 LOC106563461 coding upstream 122057 29978474 ~ 30007461 (+)
LOC110509374 LOC106563556 coding upstream 151927 29973566 ~ 29977591 (+)
LOC110509998 LOC106563463 coding upstream 173325 29952492 ~ 29956193 (+)
LOC110510004 LOC106563454 coding downstream 3403 30139343 ~ 30147325 (+)
zmp:0000001168 LOC106563451 coding downstream 39564 30175504 ~ 30222113 (+)
LOC110510009 LOC106563450 coding downstream 129050 30264990 ~ 30291203 (+)
LOC110510020 LOC106563438 coding downstream 516752 30652692 ~ 30669474 (+)
LOC110509412 LOC106563437 coding downstream 556021 30691961 ~ 30780818 (+)
G2173674 NA non-coding upstream 737 30128488 ~ 30128781 (+)
G2173685 NA non-coding upstream 9163 30120018 ~ 30120355 (+)
G2173677 NA non-coding upstream 10963 30118046 ~ 30118555 (+)
G2173683 NA non-coding upstream 13534 30115731 ~ 30115984 (+)
G2173737 NA non-coding downstream 142678 30278618 ~ 30279652 (+)
G2173738 NA non-coding downstream 146066 30282006 ~ 30284686 (+)
G2173744 NA non-coding downstream 163673 30299613 ~ 30309735 (+)
G2173747 NA non-coding downstream 168273 30304213 ~ 30307007 (+)
G2173551 vps51 other upstream 233239 29894094 ~ 29896279 (+)
LOC110509988 tmem261 other upstream 258201 29869091 ~ 29874237 (+)
LOC110509970 LOC106563483 other upstream 467284 29652518 ~ 29662236 (+)
G2173114 NA other upstream 542046 29585594 ~ 29587472 (+)
G2173675 NA other downstream 783 30136723 ~ 30137320 (+)
G2173754 LOC106563449 other downstream 183708 30319648 ~ 30323615 (+)
G2173761 LOC106563448 other downstream 200912 30336852 ~ 30355090 (+)
G2173841 LOC106563447 other downstream 328002 30463942 ~ 30468124 (+)
LOC110510022 LOC106563433 other downstream 686674 30817845 ~ 30824144 (+)

Expression


Co-expression Network