LOC110509999 (LOC106563461)


Basic Information

Item Value
gene id LOC110509999
gene name LOC106563461
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29978474 ~ 30007461 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036967378.1
AAGTTCCTAAAACTGTGACATTGCGGCTTCCGTACTATGGACTACTCCAGCCATAACATCAACTAGCTACCTAACCTACTTTTACAATCATTGTTGTCAAATAACTTCAAAAGTGGTATATCTTCAGCGTGTGTCACATCCTATCCGGACGAAATAGCATAAAATAGGTATTCGCAACATGCTAGCTATAAACAGTACGCTTGCTATGAAATTAAAATTAACCGACagtcagcaagctagctaacgttagctagctctgaCAGGACAGCTAGCTTTCTAGTTAGCTAATGACGTTAACAGTTTGGTTGTGAAGTTGCCGAGGTTTTACATAGTTTCGACGTATTACTGAAGGTTAGTTAACTAGCTGTAATTGTCTATAACCGGTTAGCGTAGCTACAAAtgagtagctagctagttgctaATTTCAGTTTGTCAAAAATATTGTTGcaaaaggtagctagctagcaagagaTAGGCCACTCGCTACTATGTAGCCAGTTTAATGCTGTCTGGTCAGTTCGGCGCTATATTGTAATCAAATCAGTGCTAGAGAGATCAGCAGCAGTTAACGTTTGTCAATAACATCCTAGTGGACaccgttatctagctagctacagacGTACGATTCTGGTTTATTATTAGTACAGTGTTCGCTAGTATTTTCGTTTTAGTAGTAGATTAGGCAGAACAGCGGGATGTCTAGGGGATTAAGTCTAGCAATGATATTGTttagaaaataaaacaaaactATGTTTATAATGCATGCAACGGCTCCCAAATTAATTCGTACATAAGGCTACATTTGTTATTTTCTTTGACTACATAAAATCTGATGCGTCTGAGGTTATTATACAAAACACTTCAGCTAAATCGGTTTATTTATTTTGAAGAGTAGCCACataaacatttgaaatgtctggAGACGGCTCGGATAGTAGTAGTAGCGAGGACTCTGATACTGGGATCCGGAGGAAAGCCTGCACTGTCAAACATGAGATCACCAATGCGAACCTCACGGGCCATACTGAGAGAGTGGGCATGGAGAACTTTGAGCTTCTCAAAGTCTTGGGCACAGGAGcCTATGGGAAAGTGTTTCTGGTCAGAAAGAACAGTGGTCATGATGAAGGGAAGCTGTATGCCATGAAGGTGTTGAAGAAAGCAGCCATCGTTCAGAAGGCAAAGACTGCAGAGCACACACGTACAGAGAGACAGGTGCTGGAGCACATCCGCCAGTCCCCGTTCCTGGTCACACTGCACTACGCCTTCCAGACCCAGACTAAGCTCCATCTTATCTTGGACTATGTGAGCGGAGGGGAGATGTTCACACACTTGTACCAGCGAGATCACTTCTCTGAGGAAGAGGTGCGGATTTACATCGGGGAGATTATCCTGGCCCTGGAGCACCTCCACAAGCTGGGCATCGTGTACCGGGACATCAAGTTAGAGAACATCCTCTTGGACAGCGAGGGACATTTAGTGCTGACAGATTTTGGGCTCAGCAAAGAGTtcctggaggaggagAAGGAAAGGACGTATTCGTTCTGTGGCACCATAGAGTACATGGCTCCAGAGATCATCAGGGGGAAGTCTGGTCATGGAAAGTCGGTAGATTGGTGGAGTCTGGGGATCCTGATGTTTGAGTTACTGACGGGGGCGTCACCATTCACcttggagggggagaggaacTCCCAGAGTGAGGTGTCCAAGCGCATCTTACATTGTGAGCCGCCGTTCCCCTCTATGATCGGTGCCGTGGCTCAGGACCTGTTGAGGAAGCTGTTGGTCAAAGACCCCCACAAGAGACTGGGCTCTGGGCCCCGAAGGGCCGAAGACATCAAGACTCATGCCTTCTTCAAGGGTCTCAGTTGGTCAGACCTGGCTGAGAAGAAGGTAGTCAGCCCGTTCAAACCAGAGATCAGGAGTGAGCTGGATACAGGAAACTTTGCTGAGGAGTTCACTGGCATGAATCCTCTCTACTCTCCAGCCAGCACCCCACCAAGCACTGATCGACTGTTCCAGGGCTATTCTTTCGTTGCTCCCTCCATTCTATTCAACAAGAACgtggtgatgggggacttcatggAGGGCCAGATGGGAGCAGAGCGACCGGGCTCATCCACTGTCCGTCGCAGTGCTATGTTAGCGGACTCTACGTTCTTCCAGCTGTATGAGCTGTGCCTGCAGGGGGCACCCCTGGGCGAGGGCAGCTTCTCTGTGTGCAGGAAGTGTCGACACCACCAGAGTGGCCATGAGTACGCCGTTAAGATCATCAGCCGCAGAATGGAAGTGAACACTCAGAGGGAGATTGCTGCCCTCAGGCAGTGTGAGGCTCACCCCAACATTGTCAAACTGCATGAGGTCTACACTGATCAGttccATACGTACCTGGTGATGGAGCTGCTGCGTGGGGGGGAGCTGCTGGAGAGGATCAAGAAGAAGAAGCTGTTTGGGGAATCAGAGGCCAGTCAGCTGCTCAGGAGCCTTGTGTCAGCTGTTGGCTTCATGCACGAGGCTGGAGTGGTGCATAGAGACCTCAAACCAGAGAATGTGCTGTTTGCAGACGAGGGGGAGGACTCGGTGCTGAAGGTGATAGATTTTGGTTTTGCCCGGGTGTGCCCTGCGGGCAGCGCCCCCCTGCAGACTCCCTGCTTCACACTGCAGTACGCTGCTCCTGAGCTCTTCCACAGCACCGGTTACGACCAGGCCTGCGACCTCTGGAGCCTTGGGGTCATCCTGTACACCATGCTGTCAGGACAGGTGCCCTTCCAGAGTAAGCAGCAGCAGCGAGCGGGGATGACCTCCTCTTATGCTGCTGACATCATGCATAAAATTAAAGAGGGAGACTTCTCGTTTGCTGGAGAAGCCTGGAAGGGTGTGTCAGGGGAGGCTAAAGAGCTTGTGAAAGGGCTTCTGACGGTGGATCCAGAGAGGCGTCTCAAGCTGTCTGCTCTGAGAGAGAACAGCTGGCTGCAGGGCGGGGCTATCCTATCCTCCACCCCCCTCTGCACCCCAGATGTGCTAGAGTCCAGCGGCCCCATTGTCCGCTCCTATGTCAACGCCACCTACAAGGCATTCAacaaggggaagagggagggcttCTTTCTGAAGAGTGTTGACAACGCCCCCCTTGCAAAGCGACGCAAGCTCAAGATGACAAGTACAGGTGTGGAGACTCGACGGAGCTCCTCTtgctcatcctcttcttcctcttcctcagctGCCTCTGCCGCTGCAACAAACTCAAAAAACCAGCCACCACACCAAACTCTGCCCCCGAAGCTAGAAAAGCActagaaggggaggagggggaagagtggGAGGAATAAAGTTAGAAGAAGGAAGCACATTAATTCAGATATGACAGATTGGGATACTGTCTCTGAAAGACCAGAGATGACTTGATTTGAATTCCAAAGTCATCTAGAATCTCCAAATTCTAAGTCTAAGAGCTTATTTATGAACCAACTATGAGACTAGTTAAATATTTCAGGATTCACCTCCCTGTTTTCTAGAAAGACGATGCTTTTTGCATTGTCGTAATGATGCAATGACTTTATCTATATGTGTTTATACCATTTGCAGTAAACTGCAGTAGCTTGTACCATCTCATTTAATTTTCCCAAGAAATTAACTAACATGTAATTTCTTGAATGGAAATAAGCTTTAGACCAGTGTTTTCATAACTCTGGTCTAGAGGATAAATATCAGTATGGTAGGTTATGGAAGACTGTTGGCTTTAAGGTCATACTAATGAAGGTTTCAGTCACCTTGCCAGGGTGATGATGATGAGCATGCAGTTATCCTGATGTTAACATGTTCTCAgtaccagagggagggagggaggcagggtggAGGGAGGCAGGCGGGCGGGAGGGAGAGGTAAAGGGAAATGAGGAGCCATAATGAGCACAAGCCATATATACATAGGGAGGTCATGACCTCTACACCGGAGCACTTGTAGATACATACACAGCACTCATCGCATGACAAAACGAGGCAGTGGTTAGGAGTCTGTTGGAAGTCTCTCACTGTATCTAATGGTGTGGTTGAGATTGAGAAATAATGGTGCTACTGTACTATATAAAGAGAAAATCTATTATTATTACTGCGGACAGCTGTTCAAGTGAACTTTGACCCTGCGTGATGTTCCCAGTCCATGGGACGCAGTCTTTGTGACCCAGATGTCCCATACTGCCAATTTACAGGAACCTTAGTATCATTCTCTTTGGCTTGAGATTTCAGTGATCTATTGACATTGGTCTCGCTGTGTATACTTAACTGGTTCACTGAAGTTCACCTGCAAGTCAAATAACGCCATCCATTGTcctgtgtgtgaatatgtgtgctTCATTAATGAACAAGCATCATGATTCTGACTAAATAAGATAAACCGGGGAAATAAACACTGGGTTATGATCAACATTCTGATTTGATTTTATATTCTCATGAACAGATGACAGTGCCCTACAGCTCATGGTGTTGAGTTCTTATGAGCAGAGCAACTTTTCGCTATATTTCTCAAAGGGACAAATCAAAATATGAATTATTTTGTACTGTGAGTAAGAATTGTCACCCTGATTTAAAgaattttgtgtttttttaaagACATTTCGGTATTTTATCATTGAATGTCAGTTACACTGATCATTTACCAATCACTTTTTTACCCAAATATATTGACTGTTGATTAGATTTGTACCTGGATATCGCACAAATGTAGTCATTTAATCAGTGATACACATTTCAGCTTTAAACACAATGCTTATTTGagtatttattacattttatgGGTTGTGATGTGTTTTTCTGATGCTGTGGTAATGGTTTTCAGACTGATTTACCTTTGGTGGGTTTGAGTGTATGTGCTGTATGCATGTTGATTGTTTTGCGTGTGCGCAGCGTGACTGGTTCTGGGTATTATATGTGCTCTTTTCCTTAGTCTCCAGGTAAACCATTATTGCAAGTTAATgtagtaaatatatatttttttcgttATTTCTTATAAACATTATTTTATGTCGGGAACTGTGCTTTTGTTCTATGCTATTGTTTGTATTTTCATTTGGCTGTTGATGTCGTATGTTGTCTTTTTAATGTTATGAATTTGAGATACTATTTTTAATGAGCTACTGCCCATGCCATGTATTGTCCTTTTTGGCAAAAAATATCAAATGTTCTTCAAAGCATATCATGATATTGAGATACACTATGTCACAATAACTTGTAATGCTTTGTCTTGTGTCGAACACTTAAATGTGGAGAAAAATAAATGATTTTACTCAA
>TU2484241
GGGAAATGAGGAGCCATAATGAGCACAAGCCATATATACATAGGGAGGTCATGACCTCTACACCGGAGCACTTGTAGATACATACACAGCACTCATCGCATGACAAAACGAGGCAGTGGTTAGGAGTCTGTTGGAAGTCTCTCACTGTATCTAATGGTGTGGTTGAGATTGAGAAATAATGGTGCTACTGTACTATATAAAGAGAAAATCTATTATTATTACTGCGGACAGCTGTTCAAGTGAACTTTGACCCTGCGTGATGTTCCCAGTCCATGGGACGCAGTCTTTGTGACCCAGATGTCCCATACTGCCAATTTACAGGAACCTTAGTATCATTCTCTTTGGCTTGAGATTTCAGTGATCTATTGACATTGGTCTCGCTGTGTATACTTAACTGGTTCACTGAAGTTCACCTGCAAGTCAAATAACGCCATCCATTGTcctgtgtgtgaatatgtgtgctTCATTAATGAACAAGCATCATGATTCTGACTAAATAAGATAAACCGGGGAAATAAACACTGGGTTATGATCAACATTCTGATTTGATTTTATATTCTCATGAACAGATGACAGTGCCCTACAGCTCATGGTGTTGAGTTCTTATGAGCAGAGCAACTTTTCGCTATATTTCTCAAAGGGACAAATCAAAATATGAATTATTTTGTACTGTGAGTAAGAATTGTCACCCTGATTTAAAgaattttgtgtttttttaaagACATTTCGGTATTTTATCATTGAATGTCAGTTACACTGATCATTTACCAATCACTTTTTTACCCAAATATATTGACTGTTGATTAGATTTGTACCTGGATATCGCACAAATGTAGTCATTTAATCAGTGATACACATTTCAGCTTTAAACACAATGCTTATTTGagtatttattacattttatgGGTTGTGATGTGTTTTTCTGATGCTGTGGTAATGGTTTTCAGACTGATTTACCTTTGGTGGGTTTGAGTGTATGTGCTGTATGCATGTTGATTGTTTTGCGTGTGCGCAGCGTGACTGGTTCTGGGTATTATATGTGCTCTTTTCCTTAGTCTCCAGGTAAACCATTATTGCAAGTTAATgtagtaaatatatatttttttcgttATTTCTTATAAACATTATTTTATGTCGGGAACTGTGCTTTTGTTCTATGCTATTGTTTGTATTTTCATTTGGCTGTTGATGTCGTATGTTGTCTTTTTAATGTTATGAATTTGAGATACTATTTTTAATGAGCTACTGCCCATGCCATGTATTGTCCTTTTTGGCAAAAAATATCAAATGTTCTTCAAAGCATATCATGATATTGAGATACACTATGTCACAATAACTTGTAATGCTTTGTCTTGTGTCGAACACTTAAATGTGGAGAAAAATAAATGATTTTAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036967378.1 False 5283 mRNA 0.45 18 29978474 30007461
TU2484241 True 1395 lncRNA 0.36 1 30006063 30007457

Neighbor

gene id symbol gene type direction distance location
LOC110509374 LOC106563556 coding upstream 883 29973566 ~ 29977591 (+)
LOC110509998 LOC106563463 coding upstream 22281 29952492 ~ 29956193 (+)
LOC110509996 LOC106563468 coding upstream 37489 29940307 ~ 29940985 (+)
LOC110509993 slc25a45 coding upstream 52797 29914857 ~ 29925677 (+)
znhit2 znhit2 coding upstream 89732 29886289 ~ 29888742 (+)
LOC110510000 LOC106563458 coding downstream 42727 30050188 ~ 30107503 (+)
LOC110510005 LOC106563457 coding downstream 113056 30120517 ~ 30127527 (+)
LOC110510002 LOC106563456 coding downstream 122057 30129518 ~ 30135940 (+)
LOC110510004 LOC106563454 coding downstream 131882 30139343 ~ 30147325 (+)
zmp:0000001168 LOC106563451 coding downstream 168043 30175504 ~ 30222113 (+)
G2173603 NA non-coding upstream 7902 29969184 ~ 29970572 (+)
G2173553 NA non-coding upstream 86050 29891987 ~ 29892424 (+)
G2173581 NA non-coding upstream 98239 29879952 ~ 29880235 (+)
G2173580 NA non-coding upstream 98999 29879208 ~ 29879475 (+)
G2173570 NA non-coding upstream 99776 29877775 ~ 29878698 (+)
G2173621 NA non-coding downstream 3789 30011250 ~ 30011476 (+)
G2173622 NA non-coding downstream 5552 30013013 ~ 30054351 (+)
G2173641 NA non-coding downstream 40511 30047972 ~ 30048401 (+)
G2173664 NA non-coding downstream 84372 30091833 ~ 30092038 (+)
G2173551 vps51 other upstream 82195 29894094 ~ 29896279 (+)
LOC110509988 tmem261 other upstream 107157 29869091 ~ 29874237 (+)
LOC110509970 LOC106563483 other upstream 316240 29652518 ~ 29662236 (+)
G2173114 NA other upstream 391002 29585594 ~ 29587472 (+)
G2173675 NA other downstream 129262 30136723 ~ 30137320 (+)
G2173754 LOC106563449 other downstream 312187 30319648 ~ 30323615 (+)
G2173761 LOC106563448 other downstream 329391 30336852 ~ 30355090 (+)
G2173841 LOC106563447 other downstream 456481 30463942 ~ 30468124 (+)
LOC110510022 LOC106563433 other downstream 815153 30817845 ~ 30824144 (+)
G2173611 NA non-coding upstream 5502 29999760 ~ 30000561 (+)
G2173614 NA non-coding upstream 10910 29983324 ~ 29995153 (+)

Expression


Co-expression Network