G2173603


Basic Information

Item Value
gene id G2173603
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29969184 ~ 29970572 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2484229
tgtgggttcagttacaggctcaaaatgaacAGAagcaaataactttcttctgaaacttatcagtctattattgttctgtgaaatgaaggctattccatgcgagaaattgccaagaaactgaagatctcatacagtgccgtgtactactcccttcacagaacagcgcaaactggctaaccagaatagaaagacgaGTGGGAGGCccgggtgcacaactgagcaagaggataagtacactagagtgcctagtttgagaaacagacacctcacaagtcctcaactgacagcttcattaaatagtatctgcaaaacaccagtctcaacgtcaacagtgaagaggcgattccatagatgctggccttctaggcatttcttgcatggaatagccttaatttctcagaacaaaattgtttctagccattttgagcatgtaatcaaacccacaactgctgatgctccagatactcaactagtctaaagaaggccagttttattgcttctttaatcagaacaacagttttcagctgtgctaacataattgcaaaagggttttctaattatcaattagccttttaaaatgatccaCTTGGCTCAGccaacacaacgtgtcattggaacacaggagtgatggttgctgataatgggcctctgtacgcctatgtagatatttcattaaaattcagtcgtttccagctacaacagtcatttacaacattaacaatgtctacactgtatttctaatcaaaAAATGAGTGTTTCttccaaaaacaaggacatttctaagtgaccccaaacttttgaacggtagtgtatgtatgatACAGTATAAGCAATGTTGTTATGCCACATAACATTTCTGTTTTGTCCTGTATGGGATTTCCCGCTGGTGACCATAGTAAAGATATTTGGATGGATTGGAAGAAGCATATAGGCAAAGTTGAAAAAATACTGTAAGCAACATTTATTTATCTTCAACCTAGCATATAGGTTGTTGGGAACATATATCTCTATTTTCAACCAGAATCATAGTCACTATGTCACATGTCAACATTTGAGGAAAGCAGAGTGTGTTGTGATGTCTATGCTGCCGTGCTCTCTGCTGCCTCGCCCTCCAATCCATACCTCTGTCCTCCATGGTGTATTTCAGGACCAGTGATAGATAGATTTCCACTATTTACGGTATATGTTACATATTTATTATTTAGAAGTGGCGGTTGCTATCACCATATTTCACCTTGTTCTAATTCCCTAGGTTGATCTTAATTTAAACAAACCATGTGTGATATGGTTTAGCACTGTAGAGCTGCTACTGTCTGTATTTTTGTGTTGTGTCCTATAAATGTGTCTGAATGTTCTCAATAAATATAGTCATCTATAATTTACAAATTT
>TU2484230
aaacttttgaacggtagtgtatgtatgatACAGTATAAGCAATGTTGTTATGCCACATAACATTTCTGTTTTGTCCTGTATGGGATTTCCCGCTGGTGACCATAGTAAAGATATTTGGATGGATTGGAAGAAGCATATAGGCAAAGTTGAAAAAATACTGTAAGCAACATTTATTTATCTTCAACCTAGCATATAGGTTGTTGGGAACATATATCTCTATTTTCAACCAGAATCATAGTCACTATGTCACATGTCAACATTTGAGGAAAGCAGAGTGTGTTGTGATGTCTATGCTGCCGTGCTCTCTGCTGCCTCGCCCTCCAATCCATACCTCTGTCCTCCATGGTGTATTTCAGGACCAGTGATAGATAGATTTCCACTATTTACGGTATATGTTACATATTTATTATTTAGAAGTGGCGGTTGCTATCACCATATTTCACCTTGTTCTAATTCCCTAGGTTGATCTTAATTTAAACAAACCATGTGTGATATGGTTTAGCACTGTAGAGCTGCTACTGTCTGTATTTTTGTGTTGTGTCCTATAAATGTGTCTGAATGTTCTCAATAAATATAGTCATCTATAATTTACAAATTT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2484229 False 1389 lncRNA 0.38 1 29969184 29970572
TU2484230 True 598 lncRNA 0.36 1 29969975 29970572

Neighbor

gene id symbol gene type direction distance location
LOC110509998 LOC106563463 coding upstream 12991 29952492 ~ 29956193 (+)
LOC110509996 LOC106563468 coding upstream 28199 29940307 ~ 29940985 (+)
LOC110509993 slc25a45 coding upstream 43507 29914857 ~ 29925677 (+)
znhit2 znhit2 coding upstream 80442 29886289 ~ 29888742 (+)
LOC110509988 tmem261 coding upstream 94947 29869091 ~ 29874237 (+)
LOC110509374 LOC106563556 coding downstream 2994 29973566 ~ 29977591 (+)
LOC110509999 LOC106563461 coding downstream 7902 29978474 ~ 30007461 (+)
LOC110510000 LOC106563458 coding downstream 79616 30050188 ~ 30107503 (+)
LOC110510005 LOC106563457 coding downstream 149945 30120517 ~ 30127527 (+)
LOC110510002 LOC106563456 coding downstream 158946 30129518 ~ 30135940 (+)
G2173553 NA non-coding upstream 76760 29891987 ~ 29892424 (+)
G2173581 NA non-coding upstream 88949 29879952 ~ 29880235 (+)
G2173580 NA non-coding upstream 89709 29879208 ~ 29879475 (+)
G2173570 NA non-coding upstream 90486 29877775 ~ 29878698 (+)
G2173614 NA non-coding downstream 12752 29983324 ~ 29995153 (+)
G2173611 NA non-coding downstream 29188 29999760 ~ 30000561 (+)
G2173621 NA non-coding downstream 40678 30011250 ~ 30011476 (+)
G2173622 NA non-coding downstream 42441 30013013 ~ 30054351 (+)
G2173551 vps51 other upstream 72905 29894094 ~ 29896279 (+)
LOC110509970 LOC106563483 other upstream 306950 29652518 ~ 29662236 (+)
G2173114 NA other upstream 381712 29585594 ~ 29587472 (+)
G2173675 NA other downstream 166151 30136723 ~ 30137320 (+)
G2173754 LOC106563449 other downstream 349076 30319648 ~ 30323615 (+)
G2173761 LOC106563448 other downstream 366280 30336852 ~ 30355090 (+)
G2173841 LOC106563447 other downstream 493370 30463942 ~ 30468124 (+)
LOC110510022 LOC106563433 other downstream 852042 30817845 ~ 30824144 (+)

Expression


Co-expression Network