LOC110509998 (LOC106563463)


Basic Information

Item Value
gene id LOC110509998
gene name LOC106563463
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29952492 ~ 29956193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591258.2
GGACAGGAACTGCACTCCAATGTCACTTCCGGTACTTCCAGGCGGGGAATTTTGAAACTTTGAGGACTAACGAGTTAAATCAAAATGAACTGCTCTCAAGTTATTCAGTCGTAGTTTTGCATTAGTTATTTGTTGTTTAGTTAGCTTGTGTGATATGTATTTGCTAATTAATTAATAATTAGTTTTACTAATTTCTCAAGTCAGCTAGGTTGTCGATAGCTACTAGCCAGATAACGTTCATGTGTATTCTTGCTAGCTAATCACCCACCGAATTCGTGTATTAACGTTAGTAAATAAATTGGACAGACGGCAAGGATGAGCAACGAGACACATCAATCCTTTTTGGCTGATTCTACCAGCCAGCCACGAAGGAGGTCAGCGCGGTTGACCTCTCCAAATCAAAATGTCCCCAACTCAGCTCCTACAGACACTGTGAAACGCAGCATCACTGTGAGGAAAATTGCACCCAGGAAAACACAATTCAATGTACCCTCTGAGGACAACAAAGAAAATGAACAAAGATTGTCTGAAGGCAGTCTGAAGAAGGCCAACATTTCTATCCCAGGAACTGCCCAGGTTCCTCCACCAAAAGCCACCATGCTCTCCCCGATTTTGGCCCCCTCACCACCCTATCCCCAGGCTGCAGGGAACCCTGAGGACTCAGCATGGTCACAGAAGGTTCGTCGGTCCTACAGCCGCCTAAGCCTAGGGGACCGTTCGTTTGAGCATCCCCAAGGCCAGGACGTGTCCTCCCCATCTCTGCGTCGGGAGACCCTGTTTGGATTTGAGAAGCTTCAGACACCCCAGGTTTTCCGCAAGGTGGCGCAGTCCAGGGTGGGCTCTGAGGCCTCCAAGTCATTCTGTGGGGTCAGCTCCTTCACCCTGATAGAAGGGGACGACAGTGCTGCTCCTGAGCCAGATTTCAACATTCCTGGAGTTGCTGtggtaaaggagaagaggaggaggaagaaggttCCTCAAATAAAACTGGCAGAGTTGGACGACCTTGCTGCAAAGATGAATGCAGATTTTGAAGAGGCGGAAGGATTTGATTTGGTGGTGGAATAAACTCATAGGTCATCCTCAAAGACTTTGACATGTAACTAGAAATCCTTTTTGCCAAGATTGGAGAAAGTAAACTTTTTACACTTCTATGATTGCATTTCTAAGGTGATGAGGTGTGAAAGTAGTTGATATTTGCATAATTATGGCACCTATGGGAACAACAAACAGGATTAATTTACAATACAGATGTAGGCTTTTTCAATGTTCTAAATGTGAGATTGGTTTAAAAAGTGACTTAATACGAGTTGTGTAATCTTAAAACCAGTTTCTATCTTCACTGATGTTCCTGTCACTTTGATAGGTTGATATTTCTTTTATTTTTGAGATAACAACTTCATTAGGTCACAGGGACATTATCTTGTGTTGAAGAGCACCCTTTTATATTTTAAATCATTGTAAATTGGATTACAGACATCGGGTGTGTTTTAACTTGTAAGATTTATTTACAAAGCCTTTTCTGTGATGTTGAGATTACAGTTGTTTGTTTTTTACTTTGTTCTTTTCCTAAGTGTTAGAATTTGGCACAGAAGATGTCCAAACTAAGAATCTTTATCATGGCAGATTGTCATGTCCTACTATGATTTCAGAACTTGTGTTTTTGGATTTGATTGAAGCCTGCATGTCATGCATTCCCTTGTCACATTTGTTCTCTAGAGGGTGCTCTCACCCTCTCATTGTGGAAGCCATCACTGTTTTTACATATAAAAtattagtttaaatgtaattattTATTCCTCTTATATACAGTTGCAgttggaagtttatatacaccttagccaaata
>TU2484191
GGAATTTTGAAACTTTGAGGACTAACGAGTTAAATCAAAATGAACTGCTCTCAAGTTATTCAGTCGTAGTTTTGCATTAGTTATTTGTTGTTTAGTTAGCTTGTGTGATATGTATTTGCTAATTAATTAATAATTAGTTTTACTAATTTCTCAAGTCAGCTAGGTTGTCGATAGCTACTAGCCAGATAACGTTCATGTGTATTCTTGCTAGCTAATCACCCACCGAATTCGTGTATTAACGTTAGTAAATAAATTGGACAGACGGCAAGGATGAGCAACGAGACACATCAATCCTTTTTGGCTGATTCTACCAGCCAGCCACGAAGGAGGTCAGCGCGGTTGACCTCTCCAAATCAAAATGTCCCCAACTCAGCTCCTACAGACACTGTGAAACGCAGCATCACTGTGAGGAAAATTGCACCCAGGAAAACACAATTCAATGTACCCTCTGAGGACAACAAAGAAAATGAACAAAGATTGTCTGAAGGCAGTCTGAAGAAGGCCAACATTTCTATCCCAGGAACTGCCCAGGTTCCTCCACCAAAAGCCACCATGCTCTCCCCGATTTTG

Function

NR:

description
sororin-B-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591258.2 False 1848 mRNA 0.42 5 29952492 29956193
TU2484191 True 570 TUCP 0.41 4 29952537 29953810

Neighbor

gene id symbol gene type direction distance location
LOC110509996 LOC106563468 coding upstream 11507 29940307 ~ 29940985 (+)
LOC110509993 slc25a45 coding upstream 26815 29914857 ~ 29925677 (+)
znhit2 znhit2 coding upstream 63750 29886289 ~ 29888742 (+)
LOC110509988 tmem261 coding upstream 78255 29869091 ~ 29874237 (+)
cnih2 LOC106563472 coding upstream 93050 29844220 ~ 29859442 (+)
LOC110509374 LOC106563556 coding downstream 17373 29973566 ~ 29977591 (+)
LOC110509999 LOC106563461 coding downstream 22281 29978474 ~ 30007461 (+)
LOC110510000 LOC106563458 coding downstream 93995 30050188 ~ 30107503 (+)
LOC110510005 LOC106563457 coding downstream 164324 30120517 ~ 30127527 (+)
LOC110510002 LOC106563456 coding downstream 173325 30129518 ~ 30135940 (+)
G2173553 NA non-coding upstream 60068 29891987 ~ 29892424 (+)
G2173581 NA non-coding upstream 72257 29879952 ~ 29880235 (+)
G2173580 NA non-coding upstream 73017 29879208 ~ 29879475 (+)
G2173570 NA non-coding upstream 73794 29877775 ~ 29878698 (+)
G2173603 NA non-coding downstream 12991 29969184 ~ 29970572 (+)
G2173614 NA non-coding downstream 27131 29983324 ~ 29995153 (+)
G2173611 NA non-coding downstream 43567 29999760 ~ 30000561 (+)
G2173621 NA non-coding downstream 55057 30011250 ~ 30011476 (+)
G2173551 vps51 other upstream 56213 29894094 ~ 29896279 (+)
LOC110509970 LOC106563483 other upstream 290258 29652518 ~ 29662236 (+)
G2173114 NA other upstream 365020 29585594 ~ 29587472 (+)
G2173098 NA other upstream 392533 29559570 ~ 29559959 (+)
G2173675 NA other downstream 180530 30136723 ~ 30137320 (+)
G2173754 LOC106563449 other downstream 363455 30319648 ~ 30323615 (+)
G2173761 LOC106563448 other downstream 380659 30336852 ~ 30355090 (+)
G2173841 LOC106563447 other downstream 507749 30463942 ~ 30468124 (+)
LOC110510022 LOC106563433 other downstream 866421 30817845 ~ 30824144 (+)

Expression


Co-expression Network