RNA id: XM_021591258.2


Basic Information

Item Value
RNA id XM_021591258.2
length 1848
RNA type mRNA
GC content 0.42
exon number 5
gene id LOC110509998
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29952492 ~ 29956193 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGACAGGAACTGCACTCCAATGTCACTTCCGGTACTTCCAGGCGGGGAATTTTGAAACTTTGAGGACTAACGAGTTAAATCAAAATGAACTGCTCTCAAGTTATTCAGTCGTAGTTTTGCATTAGTTATTTGTTGTTTAGTTAGCTTGTGTGATATGTATTTGCTAATTAATTAATAATTAGTTTTACTAATTTCTCAAGTCAGCTAGGTTGTCGATAGCTACTAGCCAGATAACGTTCATGTGTATTCTTGCTAGCTAATCACCCACCGAATTCGTGTATTAACGTTAGTAAATAAATTGGACAGACGGCAAGGATGAGCAACGAGACACATCAATCCTTTTTGGCTGATTCTACCAGCCAGCCACGAAGGAGGTCAGCGCGGTTGACCTCTCCAAATCAAAATGTCCCCAACTCAGCTCCTACAGACACTGTGAAACGCAGCATCACTGTGAGGAAAATTGCACCCAGGAAAACACAATTCAATGTACCCTCTGAGGACAACAAAGAAAATGAACAAAGATTGTCTGAAGGCAGTCTGAAGAAGGCCAACATTTCTATCCCAGGAACTGCCCAGGTTCCTCCACCAAAAGCCACCATGCTCTCCCCGATTTTGGCCCCCTCACCACCCTATCCCCAGGCTGCAGGGAACCCTGAGGACTCAGCATGGTCACAGAAGGTTCGTCGGTCCTACAGCCGCCTAAGCCTAGGGGACCGTTCGTTTGAGCATCCCCAAGGCCAGGACGTGTCCTCCCCATCTCTGCGTCGGGAGACCCTGTTTGGATTTGAGAAGCTTCAGACACCCCAGGTTTTCCGCAAGGTGGCGCAGTCCAGGGTGGGCTCTGAGGCCTCCAAGTCATTCTGTGGGGTCAGCTCCTTCACCCTGATAGAAGGGGACGACAGTGCTGCTCCTGAGCCAGATTTCAACATTCCTGGAGTTGCTGtggtaaaggagaagaggaggaggaagaaggttCCTCAAATAAAACTGGCAGAGTTGGACGACCTTGCTGCAAAGATGAATGCAGATTTTGAAGAGGCGGAAGGATTTGATTTGGTGGTGGAATAAACTCATAGGTCATCCTCAAAGACTTTGACATGTAACTAGAAATCCTTTTTGCCAAGATTGGAGAAAGTAAACTTTTTACACTTCTATGATTGCATTTCTAAGGTGATGAGGTGTGAAAGTAGTTGATATTTGCATAATTATGGCACCTATGGGAACAACAAACAGGATTAATTTACAATACAGATGTAGGCTTTTTCAATGTTCTAAATGTGAGATTGGTTTAAAAAGTGACTTAATACGAGTTGTGTAATCTTAAAACCAGTTTCTATCTTCACTGATGTTCCTGTCACTTTGATAGGTTGATATTTCTTTTATTTTTGAGATAACAACTTCATTAGGTCACAGGGACATTATCTTGTGTTGAAGAGCACCCTTTTATATTTTAAATCATTGTAAATTGGATTACAGACATCGGGTGTGTTTTAACTTGTAAGATTTATTTACAAAGCCTTTTCTGTGATGTTGAGATTACAGTTGTTTGTTTTTTACTTTGTTCTTTTCCTAAGTGTTAGAATTTGGCACAGAAGATGTCCAAACTAAGAATCTTTATCATGGCAGATTGTCATGTCCTACTATGATTTCAGAACTTGTGTTTTTGGATTTGATTGAAGCCTGCATGTCATGCATTCCCTTGTCACATTTGTTCTCTAGAGGGTGCTCTCACCCTCTCATTGTGGAAGCCATCACTGTTTTTACATATAAAAtattagtttaaatgtaattattTATTCCTCTTATATACAGTTGCAgttggaagtttatatacaccttagccaaata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484178 lncRNA upstream 60068 29891987 ~ 29892424 (+) True G2173553
TU2484206 lncRNA upstream 72257 29879952 ~ 29880235 (+) True G2173581
TU2484205 lncRNA upstream 73017 29879208 ~ 29879475 (+) True G2173580
TU2484195 lncRNA upstream 73794 29877775 ~ 29878698 (+) True G2173570
TU2484186 lncRNA upstream 78285 29871659 ~ 29874207 (+) True LOC110509988
TU2484229 lncRNA downstream 12991 29969184 ~ 29970572 (+) False G2173603
TU2484230 lncRNA downstream 13782 29969975 ~ 29970572 (+) True G2173603
TU2484247 lncRNA downstream 27131 29983324 ~ 29995153 (+) True G2173614
TU2484244 lncRNA downstream 43567 29999760 ~ 30000561 (+) True G2173611
TU2484241 lncRNA downstream 49870 30006063 ~ 30007457 (+) True LOC110509999
XM_021591256.2 mRNA upstream 11507 29940307 ~ 29940985 (+) True LOC110509996
XM_021591252.2 mRNA upstream 26815 29914857 ~ 29925677 (+) False LOC110509993
XM_036967421.1 mRNA upstream 26815 29915152 ~ 29925677 (+) False LOC110509993
XM_036967422.1 mRNA upstream 26815 29920501 ~ 29925677 (+) True LOC110509993
XM_021591245.2 mRNA upstream 63750 29886289 ~ 29888742 (+) True znhit2
XM_021590273.2 mRNA downstream 17373 29973566 ~ 29977591 (+) True LOC110509374
XM_036967378.1 mRNA downstream 22281 29978474 ~ 30007461 (+) False LOC110509999
XM_021591260.2 mRNA downstream 93995 30050188 ~ 30107501 (+) False LOC110510000
XM_021591264.2 mRNA downstream 164324 30120517 ~ 30127527 (+) True LOC110510005
XM_021591261.2 mRNA downstream 173325 30129518 ~ 30135940 (+) True LOC110510002
TU2484176 other upstream 56213 29894094 ~ 29896279 (+) True G2173551
TU2484185 other upstream 81175 29869138 ~ 29871317 (+) False LOC110509988
TU2483968 other upstream 290258 29652569 ~ 29662234 (+) True LOC110509970
TU2483674 other upstream 365020 29585594 ~ 29587472 (+) False G2173114
TU2483638 other upstream 392533 29559570 ~ 29559959 (+) True G2173098
TU2484310 other downstream 180530 30136723 ~ 30137320 (+) True G2173675
TU2484414 other downstream 363455 30319648 ~ 30323615 (+) True G2173754
TU2484421 other downstream 380659 30336852 ~ 30340691 (+) False G2173761
TU2484506 other downstream 507749 30463942 ~ 30468124 (+) True G2173841
TU2484723 other downstream 866421 30822614 ~ 30824144 (+) True LOC110510022

Expression Profile