G2173551 (vps51)


Basic Information

Item Value
gene id G2173551
gene name vps51
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29894094 ~ 29896279 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2484176
CATCTGTTTATGAATGAAACATTTTTTTATTACACCATATTACCACGTTACAATTTTAGTAATTAGCAAACAAATGATTATAGATGCACCCCACCCAAACATCATAATTTAAACAGGCAACCCAAttctttttccactaattggtcttttgaccaatcacatcagatattttcacATCCTCTCTCCCAAGGGGTTGGTACAAAGTGGATGTTTCCCGTTTTTCAGGGATACAATATTTTTAACCAAAGCTTCCGTTTCCCCTGAAAAAACAGATGTGGGAAATCCGCTCAGGCGTCTTTTTATGCCTGCCACACTAGGTTATTTcaaatcagatctttttcagagctgatccgATTGGTAAAAATACCAATTAAAAATCAGAATTGGTCTGGGTGTCTACATGCAGCAATAGTAAGTAACCTTAATCCTCCTACTGATACCACATTTACATCATGGGAATCCAGTGTGTCCAGCAAAATACCTATTTTTTAAGTCTTCCAGTTCAGTTGACTTCAATGTTCTTTTTTTTGGTTTTAAACTCTGTTACACACCATTCAATTTCACCATTGCATTTCACCAGTTCCTCAACCAATGTGACCTCTAGCCTTTAACCTCTCTCACAGATGACCTCGATGACGCTCTGCTCCATGGGAGCGGGGTCCAGACAGCGGTGGGCAGTGCTGCCCACTATCTCATCGAGCAGGAAGTGGACCAGGTTCTCATCGGAGACGAAGCGCCAGAGGTACATCTGCAGGTAGTGGCAGTCCACCTGAATCTGTTGCAGGCCATAACGACCAAAGGTACGCAGGCGGACACACTCCAGGAACGTCTTCAGACTGATCTTTATGATTCCCGTCAACACAGAGACCTTGTTAAACTCCACAGGACTGAATATTTCAACCCGCTCAGAGAAGAGCTTATGTATATTACTCAGGAGATTGGTATCCATAGGAGCACTAGGTGTGTAGCTAGGGGCGTAGCGGGTTTGCTGCCTCGAACTGCTATAGACGGAGAAGGTCCTTTTGCTGGAGTCACTGCTGTGGGCTTTCCTCACCCCCTCCTCATAGAGAAGACCCAGCACATCAATAGAGGTGGTGTCCTCCACCACTCTCTTCATCACAGCACGGACATTCCGTGGCTCGATGGTGTTGACCCAGTCTCGTGTCTCCACACTCTTTCTCAGCATCTGGGATATGATCAGGCCCTGAACCTTGACATAATGGTTCAGTAGCTTCTGTGCTGCCTCTCTGGCCTCTCCACATAAAGCTGTGACTGCAGTTACAGGAGAGTGATGCTGCACAAGAAACTGTTCGTCTGTGAGGGTGAGAATGTAGGTGATGGTGGAGGTTTCATAGTCCAGGCAGAGGCGTGACAGCAGCAGTAGGAGGGCAGGGGGTGTAGAGCCGCCCCGGTCTCCTGCACTCTCACAGAACTGACGCGAGGACTGGCACACAAACATAATGAAGTTAACCACCAGGCTCTCACGCACACCGTGGCTACAAAAC

Function

symbol description
vps51 Enables small GTPase binding activity. Acts upstream of or within several processes, including Golgi organization; lipid digestion; and regulation of phospholipase activity. Predicted to be located in recycling endosome. Predicted to be part of EARP complex and GARP complex. Predicted to be active in membrane. Is expressed in digestive system; head; heart; and trunk musculature. Human ortholog(s) of this gene implicated in pontocerebellar hypoplasia. Orthologous to human VPS51 (VPS51 subunit of GARP complex).

NR:

description
vacuolar protein sorting-associated protein 51 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2484176 True 1505 TUCP 0.47 6 29894094 29896279

Neighbor

gene id symbol gene type direction distance location
znhit2 znhit2 coding upstream 5352 29886289 ~ 29888742 (+)
LOC110509988 tmem261 coding upstream 19857 29869091 ~ 29874237 (+)
cnih2 LOC106563472 coding upstream 34652 29844220 ~ 29859442 (+)
LOC118945359 LOC106590264 coding upstream 68400 29822440 ~ 29825694 (+)
LOC110509406 NA coding upstream 153425 29739663 ~ 29740669 (+)
LOC110509993 slc25a45 coding downstream 18578 29914857 ~ 29925677 (+)
LOC110509996 LOC106563468 coding downstream 44028 29940307 ~ 29940985 (+)
LOC110509998 LOC106563463 coding downstream 56213 29952492 ~ 29956193 (+)
LOC110509374 LOC106563556 coding downstream 77287 29973566 ~ 29977591 (+)
LOC110509999 LOC106563461 coding downstream 82195 29978474 ~ 30007461 (+)
G2173553 NA non-coding upstream 1670 29891987 ~ 29892424 (+)
G2173581 NA non-coding upstream 13859 29879952 ~ 29880235 (+)
G2173580 NA non-coding upstream 14619 29879208 ~ 29879475 (+)
G2173570 NA non-coding upstream 15396 29877775 ~ 29878698 (+)
G2173603 NA non-coding downstream 72905 29969184 ~ 29970572 (+)
G2173614 NA non-coding downstream 87045 29983324 ~ 29995153 (+)
G2173611 NA non-coding downstream 103481 29999760 ~ 30000561 (+)
G2173621 NA non-coding downstream 114971 30011250 ~ 30011476 (+)
LOC110509970 LOC106563483 other upstream 231860 29652518 ~ 29662236 (+)
G2173114 NA other upstream 306622 29585594 ~ 29587472 (+)
G2173098 NA other upstream 334135 29559570 ~ 29559959 (+)
LOC110509373 LOC106563396 other upstream 1214417 28678848 ~ 28681351 (+)
G2173675 NA other downstream 240444 30136723 ~ 30137320 (+)
G2173754 LOC106563449 other downstream 423369 30319648 ~ 30323615 (+)
G2173761 LOC106563448 other downstream 440573 30336852 ~ 30355090 (+)
G2173841 LOC106563447 other downstream 567663 30463942 ~ 30468124 (+)

Expression


Co-expression Network