LOC118945359 (LOC106590264)


Basic Information

Item Value
gene id LOC118945359
gene name LOC106590264
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29822440 ~ 29825694 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005040524.1
atgtcagagtgtatctgccctctcattggctagaatggtcccacctgatcttgctTCCTCCCAATGCCTTCAATTTTTGAAGATATGTTCATCCTTAGAGTGGCCACTGGAGCATTTGATCAATATGATGGATCATCTGTGATAGGGCTCACCAGTCCTAAAAAACACAAATTAGTTATCTCTGGTTTGTTCATCCATTCCTATGGAGAAAATCTCTAAACCATTACTGACACCCCTCTCGACCCACTGCAGTTTGCCTACAGAACTAACAGGTCTGTGGAGGATGCTATCAGCATGGGCCTACACTACATTCTCAAACACCTCAATAACCCAAACACGTATGCAAGGATATTGTTTGTGGACTTTAGCTCTGCATTTACAGTTTTTTCTGAATGCTTAAACACTAACAGTGATTCTTGAAGCACTATCTCTGAAACCATTAACACTTGTAGCCAATGCATTTACCAAGTGTGCCAAACTGAATGCACGTTCtctgctttacactcagtttgcAATTTAATAACACACTTCTAGCAAAACTGTAAACATTGGTCTCTACATTGCTACACTATTTCGCCAATTGCCTTCCCACATTGACAGGTGAAAACACTTTCAGATAATGAGTTCACTTACAAATCAGAGCTTGAGCACTATAAATAGGCAACAGGTAAACATTTGGTTTGGACAACAATGGAGGCCAATATTGGCCAGAGAGTAAGAGGGGTGAGAACTAGAGGAGGACAAGGAAGAGTAGGATGAGGAGGTGAAGAAgtaagaggaggaagaggtgaagtgggagaaggagaggacggGGAAGAGGAAGGGGTGTCAGGAACACAATAACTGATGAAATCTGAGCGACTGTGGTTGACCATGTTTTCAACCATGGGATGAACATGAGGGAGGCTGGGCAACGGGTTCAACCAAATCTGAGCCCCTATGCTGTTGCAGGTATCATCCGGATATTTCGAAATGAGAACCGAGAAACATGGAGCTAGAAGCAGATGCAGTGCATCATGAGCTAATATATGTGGACGAGGCAGGTTTCAACCTTGCAAAAACAAGGGGCCATTATCATCGGACACCGTGCCATCATCAACGTCCCGGGACAACGTGGTGGCAACATAACAATGTGTGCGGCTATTAGTCAAAACGGTGTCCTTCACCATCATGCAATTCTAGGCCCATACAACACTGCACACATTATCACATTTCTGGACACCCTCCACAACAGACTGACCCCTAATGACCAGGGGCCAGAGCAGCCCAGAATTCTTCTCTGCATGGCGTTGGAAGGTGTATGATCGCCAGCCCCATCAACGCATACCCCTTCTACAGGCAATGGAGGAGGCTTGTGGAGACATCGATCAGGGGTCATGTCAGGCCTGGATACGACCAGACCCACAAAGAAGGCGAGATATAGCCTAATTTTTtttctgttcttttttttttctagcacaaatgtttttgttttctccTACTGCGCTTTTGTTGTTAGAGGAGTGTtagaacattttttttaaacgtttaaaaaaaacttttcccCCTTATTTGTGTTGATAGCATTATGTTCGGAATACACATCCATACTTTACACATTTGgatacctgtgtgtatgtgtgtttactaCATGAATGACAAAACTTTCTTGCAAACTGCTATGCCCTGCACACAGAAAAAGCCAAGTGTTTTTCATTTATACTTTCAGTGCGTAGTTTCGTGTGCTTATTCAAATTATGGTTTGTGTGGATTGTATtgacacaaaaacaaaaacgCTTTAATGTTTGAAGAGTTTTGCAAGAATTGTTTGCTTTTGCAAGAGATGTATACTGTTTTGCTGGTTTAGTGAAAGGGTTTGTGGTTAGTGTGTAGAGTTTTAGCAAAAATAGCCTATAGTTTCAAAGATCGTGCCTAAGCAATCAGAAAAAACTGTAATACCATCATCCCAGAACTGCTACAAAACAAATTCTCCCAGCTGAACGTGTCCAGCTCCATCTGTCAGTGGATCAGACTTCCTGTCCAGCAGGACACAACACGTGAAGCTGGGAAAAGACCTTTCGTACTCTTTATCCCTCagcaccaatgcaccacagggaTGCGTGCTCTCACCTCTACAATACTCACTCAGCGCCAATGACTCCACCTCCAACAACACATCGGCCAAACTACtgaagtttgcagatgacactactcTGGCCGGTCTTGATTGATGGCTCAGCTGTTAGCACTGTATATCAACcatatacccactgtatatcaaccgtatacccactgtaCATTTGTATATCTGCTCTCTCTTTATAGCTCTATGCTCACTCTACCTAGTTGTatataatgtatgtaaactttgtTTAAACTCCGTTGTCCTTATTCTGTCTGTAAATGTTGTCTGTCACTAGCAACACCATATCACCAAGTAAACTTCTGAGTATGTGTAAATGTACTTGGTGAATAAAGGTGATTCTTAAATGAATGAGGAAAGAATAGCATTTTTGGATAGATGTCAAAAATAAATTCTGAGGTTAACACatgcttaggagatcttataggttttgttctatgagatatgtgcttttttaaattaaataaatgcttcaaattTCA
>TU2484067
TTTTTTCTGAATGCTTAAACACTAACAGTGATTCTTGAAGCACTATCTCTGAAACCATTAACACTTGTAGCCAATGCATTTACCAAGTGTGCCAAACTGAATGCACGTTCtctgctttacactcagtttgcAATTTAATAACACACTTCTAGCAAAACTGTAAACATTGGTCTCTACATTGCTACACTATTTCGCCAATTGCCTTCCCACATTGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005040524.1 False 2604 mRNA 0.42 3 29822440 29825694
TU2484067 True 217 lncRNA 0.37 1 29822822 29823038

Neighbor

gene id symbol gene type direction distance location
LOC110509406 NA coding upstream 81771 29739663 ~ 29740669 (+)
LOC110509974 nxf1 coding upstream 124501 29677784 ~ 29697939 (+)
LOC110509973 LOC106563482 coding upstream 147354 29666670 ~ 29675086 (+)
LOC110509970 LOC106563483 coding upstream 160204 29652518 ~ 29662236 (+)
LOC110509969 LOC106563485 coding upstream 176969 29638568 ~ 29645471 (+)
cnih2 LOC106563472 coding downstream 18526 29844220 ~ 29859442 (+)
LOC110509988 tmem261 coding downstream 43397 29869091 ~ 29874237 (+)
znhit2 znhit2 coding downstream 60595 29886289 ~ 29888742 (+)
LOC110509993 slc25a45 coding downstream 89163 29914857 ~ 29925677 (+)
LOC110509996 LOC106563468 coding downstream 114613 29940307 ~ 29940985 (+)
G2173428 NA non-coding upstream 33689 29788453 ~ 29788751 (+)
G2173426 NA non-coding upstream 35079 29787031 ~ 29787361 (+)
G2173422 NA non-coding upstream 38862 29783265 ~ 29783578 (+)
G2173420 NA non-coding upstream 46662 29774287 ~ 29775778 (+)
G2173417 NA non-coding upstream 55441 29765515 ~ 29766999 (+)
G2173546 NA non-coding downstream 2078 29827772 ~ 29828005 (+)
G2173548 NA non-coding downstream 3117 29828811 ~ 29829051 (+)
G2173554 NA non-coding downstream 6200 29831894 ~ 29836082 (+)
G2173555 NA non-coding downstream 10447 29836141 ~ 29836501 (+)
G2173558 NA non-coding downstream 13412 29839106 ~ 29839371 (+)
G2173114 NA other upstream 234968 29585594 ~ 29587472 (+)
G2173098 NA other upstream 262481 29559570 ~ 29559959 (+)
LOC110509373 LOC106563396 other upstream 1142763 28678848 ~ 28681351 (+)
gigyf1b LOC105024601 other upstream 1509289 28277874 ~ 28313151 (+)
G2173551 vps51 other downstream 68400 29894094 ~ 29896279 (+)
LOC110509998 LOC106563463 other downstream 126843 29952492 ~ 29956193 (+)
G2173675 NA other downstream 311029 30136723 ~ 30137320 (+)
G2173754 LOC106563449 other downstream 493954 30319648 ~ 30323615 (+)

Expression


Co-expression Network