RNA id: TU2483968


Basic Information

Item Value
RNA id TU2483968
length 1397
RNA type TUCP
GC content 0.39
exon number 3
gene id LOC110509970
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29652518 ~ 29662236 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGTACATTGATCTCATACACAACCAGTGAGGTAGCCACCGTCTTCGTGGTTGGAAACGGGCACAACCCGTATACCTTCAGAAACAAGtgtcctgtgtgaaggTACTTAAGGTGTTCACTGACTGAAAGCAGCCATGTCGTCAACATCCCAGAAACACAAAGAGTTTGTGGCAGAACCCATGGGAGAGAAGCCAGTCAATGCACTTGCTGGCATTGGAGAGGTGCTTGGCAAGAGACTGGAGGAGAAGGGCTTCGACAAGGCTTACGTGGTCCTGGGTCAGTTCCTGGTGCTGAAGAAGGATGAGGAACTATTCCGGGACTGGCTGAAAGACTCATGCGGGGCCAATGTCAAACAGCAGGGTGATTGCTATGGCTGTCTGCGTGAATGGTGCGATTCTTTCCTGTAGATAAGGTTTTGTTTTTTCCATTTTATAACGTTTTCCCAAACATCTATTTACTTCTGGTCTCACATTAAATTTCACTTCATATGGGAACACTGCACATGAGGCAGTTAAGCAAAGTCATACATTGAAACACCTGGTTATTTTATACGAGTCACAATTCAGAGACCTATGGATGCTTAACAATTAGTAAGACATACTTTGCTGCAGTCATCCATGGGGTTGTTTCACCCAACTGTGTAGATCCGTAATCCTGACCTTTCCTATGATTAATATCTTTGGCTGTACAGAAGCCTTGGGGATGAGTTACTTTGTTTTCCTGCACTTTATATTTCAATTTTGCTCTGTCAAATAACCACTTTTTATAATTACTATCCCTTCATAAATGTATAACTAATGCTTGTACTTATCTCCAACTCTCTGACAGTTTGCCCCTGCATTTAGTTAAATGAACTTGTCGCTAAATTAATGAATACCATTTTAAACCATTTGACACCACATGGCTTTGACATCTATAAGATGTTGCACTGTTATTTTTACATCTGAGTTTACAGGAAACGGTTTTAAGATTTACATTTGTGATTGCCCCATGTTATCTTGTGTTTGTTTTAAGAGTTGTTGAAGCGATGCCTTAACGTTGTAATGCTAAAGCAACATTTATCTGCAATGTACCTTGAGTTGTGGAGCAGTGCATGCGGATTAAGAAGCTAGCTACTACAAATCACCTCATTTTCAAACTTCACACAAATGAAAGCCTGAAGTAAAACCACAGTAAGTAGCACTTTTTCAGGAATTCATTTATGAGCATACTTGTGTTGCTCTCTGTTTAATCGTTGAAGGATGGTTTGACTGAAACACTGGTTCATGTTTTTGCATATTGACAGTGAAAGCATGTtagtttttttcttttcttttgaaaTAAGCAACGGCAAGATCTGGACAATTCtgactttgttttgttttttgaagaaaaaataaattaaattacatGCACAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2483967 lncRNA upstream 343 29652014 ~ 29652226 (+) True G2173364
TU2483966 lncRNA upstream 583 29651330 ~ 29651986 (+) True G2173363
TU2483665 lncRNA upstream 16726 29634873 ~ 29635843 (+) True LOC110509968
TU2483664 lncRNA upstream 16909 29634295 ~ 29635660 (+) False LOC110509968
TU2483657 lncRNA upstream 20337 29628024 ~ 29632232 (+) True G2173109
TU2483995 lncRNA downstream 58950 29721184 ~ 29722775 (+) True G2173388
TU2484007 lncRNA downstream 77429 29739663 ~ 29739868 (+) True LOC110509406
TU2484011 lncRNA downstream 81026 29743260 ~ 29743543 (+) True G2173401
TU2484013 lncRNA downstream 83311 29745545 ~ 29745880 (+) True G2173403
TU2484017 lncRNA downstream 90049 29752283 ~ 29752540 (+) True G2173407
XM_021591218.2 mRNA upstream 7098 29638568 ~ 29645471 (+) True LOC110509969
XM_021591217.2 mRNA upstream 15076 29633391 ~ 29637493 (+) False LOC110509968
XM_021591216.2 mRNA upstream 28289 29610727 ~ 29624280 (+) True LOC110509967
XM_021591204.2 mRNA upstream 79125 29570335 ~ 29573444 (+) True LOC110509964
XR_005040535.1 mRNA upstream 155284 29487508 ~ 29497285 (+) True LOC118945365
XM_021591226.2 mRNA downstream 4436 29666670 ~ 29675086 (+) False LOC110509973
XM_021591223.2 mRNA downstream 4440 29666674 ~ 29675086 (+) False LOC110509973
XM_021591224.2 mRNA downstream 4443 29666677 ~ 29675086 (+) False LOC110509973
XM_021591221.2 mRNA downstream 4498 29666732 ~ 29675086 (+) False LOC110509973
XM_036967703.1 mRNA downstream 4498 29666732 ~ 29675086 (+) False LOC110509973
TU2483674 other upstream 65097 29585594 ~ 29587472 (+) False G2173114
TU2483638 other upstream 92610 29559570 ~ 29559959 (+) True G2173098
TU2482435 other upstream 972892 28678848 ~ 28679677 (+) True LOC110509373
TU2482164 other upstream 1339418 28303205 ~ 28313151 (+) True gigyf1b
TU2480665 other upstream 2327804 27322105 ~ 27324765 (+) False G2170458
TU2484185 other downstream 206904 29869138 ~ 29871317 (+) False LOC110509988
TU2484176 other downstream 231860 29894094 ~ 29896279 (+) True G2173551
TU2484191 other downstream 290303 29952537 ~ 29953810 (+) True LOC110509998
TU2484310 other downstream 474489 30136723 ~ 30137320 (+) True G2173675
TU2484414 other downstream 657414 30319648 ~ 30323615 (+) True G2173754

Expression Profile