LOC110509964 (LOC106563493)


Basic Information

Item Value
gene id LOC110509964
gene name LOC106563493
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29570335 ~ 29573444 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591204.2
ATTGGGCGAAGAGGTGCTACTGTACAAGACGACGGAAGACAACAACAGCATTGGGTACTCGAGACCGCCTACCATATGTCAAGACATTTCAGTAAGAATTTGATAAACTCGTCGATTGAAATTGAGTTAGTGAAGACAATCTTTAAGAACAGAAGATGTGAGCTAGCTACGAAGGTTTATTTTGAACATTTGATCATACAAGGCTCCCGGTGGCACACAAAGCAATAACGTTACTAGCTAGACCGTTACTGTTTCTATTTGGGTGTGCCACTTGCAATGAGAGGAAATCAACACCGACTGGGTTTTGGAGAAACAGAAATAGCATCACTTCCAAAGCCCAGTTTAACATtgacagaagaagaagaggatagCCAAAATAGAGTCAACCTATAACCACCCTCTTGCAAGTCGTCAGGACACCTTGGGTATTTACAATGGACCACATACATGATTGTGTGGATGAATGTGAGTCTGACCACTCAGGAACCACACACAACTCTGAATTTCAGCTCCATGTCTCAACTACAATGAGCAACAGACCAAGACCAGGTGAGCGAGTCCGGCTCTACTCAGAGTCCCAGGTGTGCTCCCAGGTTGGAAAAAGGGAAGACACAGAGTTTCAGGATGTGAtgactcctactgaggatggcgGGGGTGATGGGGCTTCATTCCGAGGCCGATCACAGTCTGCTCCTCCTGCACTGTGGGCTGCAAAGAAATATGGCTGCCAGCTGAGGAGGATGAGTGATGAATTTGACACCTGGCTCGACAAAGGGGAGCCCAAGAGAGGGATTAGCCCAGGAGGAGGCAAGCAGAAAGTCTCCCGAGGATGGTTCTCTTTCCTCTGGAGTCCAAAGGAGGCAGAAGGCAGGGAGTGAGAAACCAATACAGTACGCATTTCTTTCAGAGACCCAGCCAAGGCATAAAGGAGCTCATACACATTTCCATAATGACTGGACCACACCTGAAATATTCACATCTCATAGGCATACTTTTGCTTAAATTACAGTATGTCTTTGGAGAATATCACCAATTCAAATGTGACCTTTTTGtacaatcaaatcaaacgttatgcAAAAATGCATTGCATATTGAAAATATGTTGCAATATTACCAAAAAGTTATTCAGTGCATAATAAATGCATTTTCGAAGAAATGCAGTCATTAAAAAGCGACAATCTCTTGTGCCAATTACATATTTATAAACATATTTGCAGAGAAATGTCAAATTGTTCTATGAAATGTTTCTACATTTGTAAGTATGAATTTCAAAGCGTAGGCTAATAACTAATGTTTTGAAATAAACTAAATGTAAATATACTTgaatgattaaatatgaaaccTGTGAAAGAACAACTGATCTGTGACAACAATAATTACAAGACGGGTATGGTGTACAAAACGTTTTATTATACAGACCCCCCCCCACCTATGCTAGCCTATTAAATGCCTTTGTCTGCAAAAACTTTAGTGCATTCTGACTTGACATAGGCGCATGTAACTCCAGTGTGCGATAGAATGAGTAGATTTACGTAGACTTAGATGGACAGGCACCTATTTCAAGTCAGGGTATTGCCAAAAACGTAAAAGTAGATGTTCAATTATCTTCATACATACTTAACTGATACACtaagtttattttggtattgctcTTAAACTTAGATGCTTTACATTTCATTATCTTCCTTCATTTGCAATAGTCTTTAATTGATTTCGTATATTTTTTCAATTGTATAGTGTGTATACCGGTATGTAAATATTTACAATCCAGGCCATATGCAGCCTTCTCAACTGCCTTATATGCAAATATTTGGAATACTGTTAAGCATTCAGTTGAAGAAATATGTGTGTATATGGCAATCTGAATCAGTTAAAACTGATATTCTACTTGAAAATTTGTGTGTGGCTCAACATTTTTATATTTATCTTTTTCATAAAAAAACAACTGTATAACTATTTGTAAATATTTGTTATGTTACGTAACAGATTAAATGTTTGAACATTGCTTATTAAAATGTGA

Function

NR:

description
bcl2-associated agonist of cell death-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591204.2 True 2020 mRNA 0.39 4 29570335 29573444

Neighbor

gene id symbol gene type direction distance location
LOC118945365 NA coding upstream 73050 29487508 ~ 29497285 (+)
LOC110509962 LOC106603154 coding upstream 133273 29433858 ~ 29437062 (+)
LOC110509959 LOC106563498 coding upstream 142467 29325241 ~ 29427868 (+)
LOC110509958 LOC102778633 coding upstream 250680 29314791 ~ 29319655 (+)
LOC110509955 slc3a2 coding upstream 257102 29308144 ~ 29313233 (+)
LOC110509967 LOC106563487 coding downstream 37283 29610727 ~ 29624280 (+)
LOC110509968 LOC106563486 coding downstream 59947 29633391 ~ 29637493 (+)
LOC110509969 LOC106563485 coding downstream 65124 29638568 ~ 29645471 (+)
LOC110509970 LOC106563483 coding downstream 79074 29652518 ~ 29662236 (+)
LOC110509973 LOC106563482 coding downstream 93226 29666670 ~ 29675086 (+)
G2173104 NA non-coding upstream 1872 29568140 ~ 29568463 (+)
G2173103 LOC100380853 non-coding upstream 2881 29567236 ~ 29567454 (+)
G2173102 NA non-coding upstream 4322 29565800 ~ 29566013 (+)
G2173097 NA non-coding upstream 12379 29557741 ~ 29557956 (+)
G2173095 NA non-coding upstream 13179 29556786 ~ 29557156 (+)
G2173106 NA non-coding downstream 1809 29575253 ~ 29575755 (+)
G2173113 NA non-coding downstream 7170 29580614 ~ 29581724 (+)
G2173114 NA non-coding downstream 12150 29585594 ~ 29587472 (+)
G2173117 NA non-coding downstream 18519 29591963 ~ 29594291 (+)
G2173120 NA non-coding downstream 33303 29606747 ~ 29607845 (+)
G2173098 NA other upstream 10376 29559570 ~ 29559959 (+)
LOC110509373 LOC106563396 other upstream 890658 28678848 ~ 28681351 (+)
gigyf1b LOC105024601 other upstream 1257184 28277874 ~ 28313151 (+)
G2170458 LOC106563185 other upstream 2245570 27322105 ~ 27324765 (+)
LOC110509877 LOC106563217 other upstream 3037555 26504919 ~ 26532797 (+)
LOC110509988 tmem261 other downstream 295694 29869091 ~ 29874237 (+)
G2173551 vps51 other downstream 320650 29894094 ~ 29896279 (+)
LOC110509998 LOC106563463 other downstream 379093 29952492 ~ 29956193 (+)

Expression


Co-expression Network