LOC110509955 (slc3a2)


Basic Information

Item Value
gene id LOC110509955
gene name slc3a2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29308144 ~ 29313233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591192.2
GCCCTTCCTTAAAACTGGGCGGTTGGGAGGCTACTGACGCCTACAGTGCTATATAAAGAGCGCATTTCTGCGGCCGTGGATAAACCATTTTTCTCAGCATTAAGGTTAACCTGAAGGCGAATTAAAAACTATTTACGCGACCAGTTATCTTCACCAGAAAATCTCAATTGAACCAACGTCACAATGAGTAAGGACACCGAGGTAGACATGAAGGATGTGGAGCTCAATGATATGGACCAGGAGAAGCAGCCGATGACGGGCGGGGTAGCGAACGGGGATGCTGGTTCTCCCACCTGCACGGAGAAGAACGGCAGCGTTAACGTGAAAATCCCCGAGGAGACCGAGACTAAATTTACCGGTTTATCCAAAGAGGAACTCCTCAGAGTCGCTGGAACACCAGGGTGGGTCCGGACAAGATGGGCCCTTCTGATTCTGttctggctgggctggctggggatGCTGGCTGGAGCTGTGGCCATCATTGTTCAAGCACCTCGCTGCAAAGACATTCCTGCCATGAACTGGTGGAATTATGGACCTCTGTACCAAATTGGAAATGTGCAAGCTTTCAGCGAGTCCCAGAATCTAAAGGGTGTGGAGGACAAGATTGACCGTCTGAGCCAGCTGAAGGTTAAAGGTCTGGTCATTGGGCCCATCCATGTTGCCCCCTTAGACAACCTTGTGAGCCTGAACTTTGAGGAGATCTCCTCTGACGTTGGCAATCTGGAACAGTTCAAAAGCCTCATTATAGCTGCACACAAGAAGAGCATCGATGTGATCCTGGATCTGACTCCCTACTATCTGGGAAGTGGACCATGGTTCACTAATGTTAGTGTCACAAATGTTGCTGAGAGACTCAAGTCTGCCCTGGTGTTCTGGCTGAACCAAGGTGTGGATGGGATCCAGCTGTCTGGTGTAGAGCGTGTGTCCAGTGTAGTTCCGTCTCTTTGGGCTGACATTCGAGCCATTGTCCAGAATGGGACTGAGGGAAAGAGAAGGATTCTGATTGGAGTGACTGAGAAGACCTCTGCTGTTGGAGTTTCTGAACTGCTTAACTCCACTGGGGTGGACCTACTCCTATCCGGGGCCCTCAGGTCTAAGAGCATGACCGCTACGGATCGTGCGCAGACTGTCCAGCAGCTGCTCTCTTCTCACAACCAGACCCAGCTGGCCTGGAACATTGGGGACAGGAAGGCGGGACACCTGGCCACACTGGTGGGCCCAGACATGGTGAACTTCAACCAGATGCTCCTGCTCACACTGCCCGGAACCCCAGTGTTCAACTATGGGGATGAGATTGCCCTGGCTGATGTGGATACAAAGTCCCCTAAGATGCTGTGGGATCCACTCGAAGATGAGACAAATGGAACTGCTAAGGAGGAGAAAGAACAGAGGCTCTCCTGCCGTTCTTTCTTCAAGACTCTGAGTGAACTGCGTGGAAAAGAGCGTTCCCTGCAGCATGGGGACTACATTCCCCTCTTCAATTCAACCTCTGCCCTTGCTTACCTCCGCCAGTGGGACCAGAGTGGGCGCTATGTCGCTGCCTTCAACTGGGGCAGCGACGCAGTGACCCTTCAGCTGTCCCACCCTGACCTGCCTGCTCGGGCTGTGGTCCAGGTGAGCACAGACCAGGTCAACCTGGCCCCCGACAGTACTGTTGCACTCTCTGCGTTGGAGCTAGGCCCAGGCCAGGCTGTCCTGCTACAGTTCCCCTACATAGCCTAGAAAGAGGAGAGATCCCTGCACCATCTGTGTGGGCACTGATAAAGTAGTCGTCACTTATTTGATAAATGATAAAGTAGTCGtcacttttttttgtatttacatTTTCTAGGGAATTCTGTTACTTTAATGGGAAAAAAGTCTGAGTCATTCAAATAGCCATAGCATTTTAGCATGCACTCATCAATATATTTTACTTGAACTCCTAGGACATAAACTGCTGTGAATTAGTCCTGTATTCTAGAATACGGTGTTGGTCAGACCTACAAACACCTGTACACATCGCAAGCACCAGTCAACACTTCTGCAACTATCTGTCTTTCTTGCTGTTACTGAAAATACATTCCAGACCATGAAATGCAATGCTTgaatttatcattttaaaaatgtgttttattggcTTTTTTTTTAAGTTGTCTTTTCAGGCCATGGTTGGCCCCTTACTGAAATGTTATAAATGTTTCTTACCTGTTTCAAGAATGATCAATTATCTGATGTTGATTGCTTTGGCAGCAGAAGGTGTAAAACACATGAAAGGTGGAGGGGCTTAAACTCTTTCCTCCTATTAAATTGGCATGATATAAAATGAGGGGGAAATAAACAACTGAATACAACCTTTA

Function

symbol description
slc3a2 Enables amino acid transmembrane transporter activity and double-stranded RNA binding activity. Involved in carboxylic acid transport and viral entry into host cell. Acts upstream of or within response to exogenous dsRNA. Located in cell surface; nucleoplasm; and plasma membrane. Part of amino acid transport complex; apical plasma membrane; and basolateral plasma membrane.

NR:

description
4F2 cell-surface antigen heavy chain

GO: NA

KEGG:

id description
K06519 SLC3A2, MDU1, CD98; solute carrier family 3, member 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591192.2 True 2342 mRNA 0.49 9 29308144 29313233

Neighbor

gene id symbol gene type direction distance location
LOC110509954 LOC106563504 coding upstream 9545 29290968 ~ 29298599 (+)
LOC110509956 LOC106563505 coding upstream 17384 29286398 ~ 29290760 (+)
LOC110509953 dipa coding upstream 27259 29279348 ~ 29280885 (+)
LOC110509944 LOC106603168 coding upstream 134565 29129862 ~ 29173579 (+)
cmc4 cmc4 coding upstream 209060 29098274 ~ 29099084 (+)
LOC110509958 LOC102778633 coding downstream 1558 29314791 ~ 29319655 (+)
LOC110509959 LOC106563498 coding downstream 12008 29325241 ~ 29427868 (+)
LOC110509962 LOC106603154 coding downstream 120625 29433858 ~ 29437062 (+)
LOC118945365 NA coding downstream 174275 29487508 ~ 29497285 (+)
LOC110509964 LOC106563493 coding downstream 257102 29570335 ~ 29573444 (+)
G2172953 NA non-coding upstream 7660 29299973 ~ 29300484 (+)
G2172940 NA non-coding upstream 37956 29269807 ~ 29270188 (+)
G2172923 NA non-coding upstream 69604 29237670 ~ 29238540 (+)
G2172897 NA non-coding upstream 71076 29236788 ~ 29237068 (+)
G2172765 NA non-coding upstream 202662 29104947 ~ 29105482 (+)
G2172962 NA non-coding downstream 10783 29324016 ~ 29324231 (+)
G2173004 NA non-coding downstream 75771 29389004 ~ 29389653 (+)
G2173006 LOC106563499 non-coding downstream 77877 29391110 ~ 29394296 (+)
G2173049 NA non-coding downstream 156044 29469277 ~ 29469775 (+)
G2173067 NA non-coding downstream 194656 29507889 ~ 29509665 (+)
LOC110509373 LOC106563396 other upstream 628467 28678848 ~ 28681351 (+)
gigyf1b LOC105024601 other upstream 994993 28277874 ~ 28313151 (+)
G2170458 LOC106563185 other upstream 1983379 27322105 ~ 27324765 (+)
LOC110509877 LOC106563217 other upstream 2775364 26504919 ~ 26532797 (+)
LOC110509876 LOC106563358 other upstream 2843583 26463263 ~ 26464615 (+)
G2173098 NA other downstream 246337 29559570 ~ 29559959 (+)
G2173114 NA other downstream 272361 29585594 ~ 29587472 (+)
LOC110509970 LOC106563483 other downstream 339336 29652518 ~ 29662236 (+)
LOC110509988 tmem261 other downstream 555905 29869091 ~ 29874237 (+)
G2173551 vps51 other downstream 580861 29894094 ~ 29896279 (+)

Expression


Co-expression Network