LOC110509956 (LOC106563505)


Basic Information

Item Value
gene id LOC110509956
gene name LOC106563505
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29286398 ~ 29290760 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591193.2
tttaaacatttttttttcttaataTAGTCTAGAGAcgttattatactctattctatatGGACATTGACTGTTACAGTCTAGATCTGTAGTTTAGCCTATTGAACGTCGTTCAAGTGCATACTGTgattgtgtcagtgtgtgttcgGGGGAGGGTTATAATGAAAATACAATTCCCATGATACTTTGGGTTGACACTTGCTCCCTTTGTTCTGATGCCCGTCAGGCGCGTGTCCGTCGGTCTAGTGTGAACTCAACAAGAAGAACGAACATTTCATTTTCGACTCAGACGCTGATACACGAAAGACCCAACCATGGCCTCTGGGGTGACAGTGACTGATGAAGTTATTACAGTCTTCAATGAGATGAAGGTCCGTAAGGCCCAGGCGAATGAggatgagaagaagaagaggaagaaggcaGTGCTGTTCTGTCTCAGCGAGGACAAGAAGCACATTGTCCTTGAAGCAGGTAAAGAGATTCTGACCGGTGATGTGGGTACCACCATCGCAGACCCTTACCTGCACTTTGTCAAGATGCTGCCTGCAGACGACTGTCGCTACGCCCTCTATGATGCAACCTATGAGACCAAGGAGACCAAGAAGGAGGACCTTGTCTTCATCTTCTGGGCCCCAGAAGGTGCTCCACTGAAGAGCAAAATGATCTATGCCAGCTCAAAGGATGCCATTAAGAAGAAATTCACAGGTATCAAGCATGAATGGCAAGTTAACGGTTTGGAGGACATCAAAGATCGGCGCACCTTAGCAGAGAAGCTTGGAGGCTCATCAGTGGTCACCCTTGAAGGTGGGCCTGTATAAATCCACTCTGTCAACTGAGGCCTGCagggaaagaaaaaaaacaaaatttAAGTCCCGGGGGTATGGCTGTTGATTCCAGAATGAGAAGGAATTGGGTGGGGGGTTTAGAGTACAAATAAGATGGGGTGGAGGGTATCTTGTTGTGGGGAGAAAGATCAAGTATGCTATTTCATGGTTTAAAATTGTGGTTATCATTCCACTTCTCACAATGAAGAACAAACATAGACAAGTCTCAATTTGTGATGAAGGATTATGACAAAATAGATGAAGCTTTGCGTCAACATTTCCAAGATTGTCCTTGCAATTTCCAAACGAATGAAGAACAAACAAAATGTGGTTTACACAATGAAATCATTAAGGAGGATATTTTTTAaacagatgaggactgggtaTGTCTGTTGTATGATGGTGTATGGATCAGGCAGAGCAAAGAGAAACTTGAGTgaaaaatcaaagtttattggtcacaaacaGTTAAGCAGGTGTCATAGCGGTGCAGCAAAAATACTTGTTACTTGCTGGGTAAACTTGTCAATTTATGCACTTTGTTCACACCTAATTTATTTGATGGTAATTCCTCTATTGACACATTTGTTGTTCTTTAGCATATAAGTAGTTAAAACTAGGTTTATTTTCAAACATGCTTCCCGTAcaagtagaaataaaaaaacatagcATTATTCCAGGAAGTTATTTCCAAGACCTTCCAGACAATTGCTGTGTACAAAAATGCATTCCTTTTTTCTTGATGAAATTTCAGAACAGCTTAATTAAACATAAATTGGTTGAGGGTTTAACAAGATGGAGTCAGGGGTATGTAGTAATGTTGGTAGCTCCAGTTGGAAGAAGCCTATGAGAGAAGGTAAAGTGTGGATGGATATATTGTGGGTGTTTTTGTCTCATGTCTAAATAAAGAAAATGCACTTACAT

Function

NR:

description
PREDICTED: cofilin-2-like

GO: NA

KEGG:

id description
K05765 CFL; cofilin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591193.2 True 1745 mRNA 0.41 4 29286398 29290760

Neighbor

gene id symbol gene type direction distance location
LOC110509953 dipa coding upstream 5513 29279348 ~ 29280885 (+)
LOC110509944 LOC106603168 coding upstream 112819 29129862 ~ 29173579 (+)
cmc4 cmc4 coding upstream 187314 29098274 ~ 29099084 (+)
gabra3 LOC106563399 coding upstream 310911 28834579 ~ 28975487 (+)
LOC110509373 LOC106563396 coding upstream 605047 28678848 ~ 28681351 (+)
LOC110509954 LOC106563504 coding downstream 208 29290968 ~ 29298599 (+)
LOC110509955 slc3a2 coding downstream 17384 29308144 ~ 29313233 (+)
LOC110509958 LOC102778633 coding downstream 24031 29314791 ~ 29319655 (+)
LOC110509959 LOC106563498 coding downstream 34481 29325241 ~ 29427868 (+)
LOC110509962 LOC106603154 coding downstream 143098 29433858 ~ 29437062 (+)
G2172940 NA non-coding upstream 16210 29269807 ~ 29270188 (+)
G2172923 NA non-coding upstream 47858 29237670 ~ 29238540 (+)
G2172897 NA non-coding upstream 49330 29236788 ~ 29237068 (+)
G2172765 NA non-coding upstream 180916 29104947 ~ 29105482 (+)
G2172953 NA non-coding downstream 9213 29299973 ~ 29300484 (+)
G2172962 NA non-coding downstream 33256 29324016 ~ 29324231 (+)
G2173004 NA non-coding downstream 98244 29389004 ~ 29389653 (+)
G2173006 LOC106563499 non-coding downstream 100350 29391110 ~ 29394296 (+)
G2173049 NA non-coding downstream 178517 29469277 ~ 29469775 (+)
gigyf1b LOC105024601 other upstream 973247 28277874 ~ 28313151 (+)
G2170458 LOC106563185 other upstream 1961633 27322105 ~ 27324765 (+)
LOC110509877 LOC106563217 other upstream 2753618 26504919 ~ 26532797 (+)
LOC110509876 LOC106563358 other upstream 2821837 26463263 ~ 26464615 (+)
G2173098 NA other downstream 268810 29559570 ~ 29559959 (+)
G2173114 NA other downstream 294834 29585594 ~ 29587472 (+)
LOC110509970 LOC106563483 other downstream 361809 29652518 ~ 29662236 (+)
LOC110509988 tmem261 other downstream 578378 29869091 ~ 29874237 (+)
G2173551 vps51 other downstream 603334 29894094 ~ 29896279 (+)

Expression


Co-expression Network