LOC110509968 (LOC106563486)


Basic Information

Item Value
gene id LOC110509968
gene name LOC106563486
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29633391 ~ 29637493 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591217.2
catgtgtatcatgaatggtccaccactaaggacatccagccaacttggcacaactgtaggaagcattggagtcaacatgagccagcatccctgtggaacgcttttgacacatGGTACTTCATGCCCCGGTGAAtgaaggctgttctgagggcaaaagggggtgcaactcaatattaggaaggtgttcctaatattttgtacactcagtgtatatattgtGGACTTTGTTGACTGGAAATGTGCACATGTGAAGGTGAAAggtgaaatcaacacaaaaaagaCTTTATCAATATAACGGCACATTAGTGAGTGATACTCTGAAGAAGCACAGAGGCTGCTGCTCTCTCCCCAGTGACTGTTAGACATTCAAGCCATGAGTGCCAATTTGGAAATTATCGAACAGTTACATTATACAGTCAGTGGGACTGTCAGATTGCCATTGATGAATCAGATTTTCACTGAACCCGGATACACCCTGTTCACCATTACATAAGTGTTGGTTGGGAGGCAGGGTGGTGTGATTAGGTACCCTGGGGGCAGATCAATCAGCAGCCCCACTCTGGGACTCACATCCACTGCATGTGGTCTGTGTGACAACAGCCTCTCCAGCCAACAATAGTAGACAGGTACAGGCATACTGAAACTGGGAAACACTTGATGTTGCCTTGCCAAGGACCTCTGTCCTTGGTCAAACTTTAGTTCCATCGTTGCATACAAACTGATGATGTCAGGGAAGAGAGGGAGTCGGCCATGGCAGGTTTCGGTGAGCAAAAGGGACAGGGCGAGAGGAGGGAGGGCCATAGACCGGCAAGGAATCAAGGGGTAGAGAAATTATACTGATACAGGTGTCCCTCAATGCAGTTAACACGACAGTGCTAAAACTAAAATGGCCTTAGAGGGAGGGAGTTTTATTCAGGTTTGTACAATGTGTGTTTTCCGTGTGTGTAaaactaaagagagagagtggtgaagCTTGAGGCAGTAGGCTATATGTTCACATTCCATTTCATGAGAAAATAAGTCAATTTTGAAGTAATCTTTTACATTCAAACTCAACTTAGCCTATGACCTTATAATTGCAGACATGTTTTCCTCTATAGGCTGATGTCCTCTAAAAAGTATGATATATTATTATGAAGCTGCCCTTTTTATGTCTATATCCATCAATCAAACCATATAGTCAAATACAAATCTGCAATCAGAACAATGTAAATCTGAATGTATATGTTAAACAGCTATGCTGAACGGAACTATGTGGTCTGTGATTTGTAAATACCATGATTTTTACAATAAGCCTACTGCTTGGAGGAATTtgactgtttgtgtttgtggtgGCCTCATATTTCAAACCCTCGTGACAGATGTCGTAGGCCTATGGGTGTGGTTTGTCTTCTACCTTGTTGCCATCCATCCATGACTTACGTGCAAATGCTGACTTGTGGTGAATTCACCTGCGGAGCTTCTCCTGCATTCTTCAAGCTCTATGAATGATACCTATTGAACACAATGCTAACCAAAGCTAAGAATTCATTTAATTATTTTGATTCAACTCAATGGGACGGTAGGAAAGAATATGGGCAATTTTGGTTTTCCTTTTCCTACCAATGGATAAATGAGGCGTCATGATTTTCTTAAATCTTGGGATGTTGACTAGCCTATGAACAACCTATGCAGCTTGCTCGATTATTGTACTTTGCTGCTGTTCATTTTCTAATTCAATGTTTAATATTAGTTTATTATGTATTCGACTTCTTAGAAGACGCCTACTGTAAACCTAATCTACAGCCATCACTAAAGGAGCAGAAAAGCATAAGAGGATCGAATAGTCAAAATGATGGATCTTCAATAACGTTTTCTTTCCTCTACTGATACTCACGTCTTCTCCACGCCTGAGCCTACAGTACTTTTTCAGCCAATGGCCCGATGCCGATGCAATGGAACGATCTTGTGCCTCTGCCTCATGCCCTGTGTGATGATGGGACATCTCCTGGTTTATATCATGGTGTCCATATTTGTATCCATATCCTACTCCCCTCCCCACCTACCTGTCCACTTTGTTGCCCCAGGGGTCTCTGCCAACTCTGGGGCACTGGCCTCCCATCCCCTGGGCCCCTTCTGGAACCTTCGCCTGGAGGACAGTGCTTTGTGGAACCAGCTTCAGCATCTCTGGGACCGGCACCATAACCCCATTTTGAGGGGCAACTCAACTGCAGGTATGATCACAAGGCTTAGCACTCAGCCACCAGAGATGGAGGTCTCCTCAGACTGTGGCCCAGACAAGTGCTGGCTGCCTCACCTACCTGACTTCAATACCCTGCCAGAGCAGATGAGGGCATTTGTCCAGTCCATGCATTGCAGGGTGTACCCCTTCCTCATGAACCAGCCCAGAGTGTGTGCTGGCAATGAAAGCACTGGGCCGGAGCTACCTATGCTGCTAATGGCCATCAAATCCCAGGTGGGTAACTTTGAGAACAGGCAGGCTATCCGGGAAACATGGGGGAGAAGTGGCTGGGTGAAGGGGGAGCTCGGGGGGAGAGGTGGGCTGGTGCGTACAGTATTTCTGCTGGGTAGACAGGACTCGACAACGGGCCCTCACCCAGACCTTGGGGGCCTCCTGATGCTGGAGAGCCAGCAGTATGGGGACATCCTGCAGTGGGACTTCAGGGACACTTTCTTTAACCTGACCCTGAAAGATCTGCTTTTCTGGCATTGGCTTCAGAACCACTGTCCAGGGGCACAGTTTGTCTTCAAGGGTGATGATGATGTTTTTGTTAGGACAAGTTCCCTCCTGGACTACCTGCATAAACAGAGGGAGGAGAACGGCATGTGGAGCGCAGATAGGAACAAAACTGAGAAGATAAAGGATTTGTTTGTGGGGGATGTAATTCAGAATGCAATGCCAAACCGACAGCCAACCACCAAATACTATATCTCAGAGAGTTTTTACAAAGGTGCATACCCACCATATgctggtggaggaggagtggtgTACTCTGGTGCACTTGCTATGCGTCTGAGACAGGTGTCAGAGAGGGTGCATCTGTTCCCCATCGATGATGTGTATCTGGGCATGTGCCTCCACAGACTTGGGGTGGCCCCCATCCATCACCCTGGATTTTATACCTTTGATCTcccagaaacagagagggagaagccttGTGCTTACAGCTCTGTGCTGCTGGTTCATAAGCGAAACCCTAAAGAGATGCTCACACTATGGAGGAGGCTGCAGAGTCCACCCTCACCATGCTGAAGAAACTGTAAAAGGGTGGGGCATCAGACCACGGCCATTAGgctgtggtgtaaagtacttaagtacaaatactttaaagtactacttaagtagtttttgggggtatctgtactttacttgactatttatgttttgtcaacttttactccactacataccta
>TU2483664
AGTTTTATTCAGGTTTGTACAATGTGTGTTTTCCGTGTGTGTAaaactaaagagagagagtggtgaagCTTGAGGCAGTAGGCTATATGTTCACATTCCATTTCATGAGAAAATAAGTCAATTTTGAAGTAATCTTTTACATTCAAACTCAACTTAGCCTATGACCTTATAATTGCAGACATGTTTTCCTCTATAGGCTGATGTCCTCTAAAAAGTATGATATATTATTATGAAGCTGCCCTTTTTATGTCTATATCCATCAATCAAACCATATAGTCAAATACAAATCTGCAATCAGAACAATGTAAATCTGAATGTATATGTTAAACAGCTATGCTGAACGGAACTATGTGGTCTGTGATTTGTAAATACCATGATTTTTACAATAAGCCTACTGCTTGGAGGAATTtgactgtttgtgtttgtggtgGCCTCATATTTCAAACCCTCGTGACAGATGTCGTAGGCCTATGGGTGTGGTTTGTCTTCTACCTTGTTGCCATCCATCCATGACTTACGTGCAAATGCTGACTTGTGGTGAATTCACCTGCGGAGCTTCTCCTGCATTCTTCAAGCTCTATGAATGATACCTATTGAACACAATGCTAACCAAAGCTAAGAATTCATTTAATTATTTTGATTCAACTCAATGGGACGGTAGGAAAGAATATGGGCAATTTTGGTTTTCCTTTTCCTACCAATGGATAAATGAGGCGTCATGATTTTCTTAAATCTTGGGATGTTGACTAGCCTATGAACAACCTATGCAGCTTGCTCGATTATTGTACTTTGCTGCTGTTCATTTTCTAATTCAATGTTTAATATTAGTTTATTATGTATTCGACTTCTTAGAAGACGCCTACTGTAAACCTAATCTACAGCCATCACTAAAGGAGCAGAAAAGCATAAGAGGATCGAATAGTCAAAATGATGGATCTTCAATAACGTTTTCTTTCCTCTACTGATACTCACGTCTTCTCCACGCCTGAGCCTACAGTACTTTTTGTAAGTTACTCCTGACCTTAGTCTTGTTATAAAATGAACAACAGTATGCTAATGTAATCGGTTGTAATGGAAACCTTATTTTAGCTAATAATGTAGATCTACATTTTGTCTTTTGGATATTATTCCTAATGTATTCATTATAACCTCTAAGTTGTATGTGATTGTTGATCTTTTGGGGGGTTCATGATGGCAAACATACATTCACAATAGCAAAATGTAGACAAAACTATGTGGGTTAATAACCTTGAAACGAGTATTACATGGAAGTTGTTATATCTCTGGTAACTGGATGTTTGTTCGTTTATTTTCACCAACTTTTAGAGGAATAGGAAACACGGTATACCTTCAGGTTTCCTAATCA
>TU2483665
TATGAATGATACCTATTGAACACAATGCTAACCAAAGCTAAGAATTCATTTAATTATTTTGATTCAACTCAATGGGACGGTAGGAAAGAATATGGGCAATTTTGGTTTTCCTTTTCCTACCAATGGATAAATGAGGCGTCATGATTTTCTTAAATCTTGGGATGTTGACTAGCCTATGAACAACCTATGCAGCTTGCTCGATTATTGTACTTTGCTGCTGTTCATTTTCTAATTCAATGTTTAATATTAGTTTATTATGTATTCGACTTCTTAGAAGACGCCTACTGTAAACCTAATCTACAGCCATCACTAAAGGAGCAGAAAAGCATAAGAGGATCGAATAGTCAAAATGATGGATCTTCAATAACGTTTTCTTTCCTCTACTGATACTCACGTCTTCTCCACGCCTGAGCCTACAGTACTTTTTGTAAGTTACTCCTGACCTTAGTCTTGTTATAAAATGAACAACAGTATGCTAATGTAATCGGTTGTAATGGAAACCTTATTTTAGCTAATAATGTAGATCTACATTTTGTCTTTTGGATATTATTCCTAATGTATTCATTATAACCTCTAAGTTGTATGTGATTGTTGATCTTTTGGGGGGTTCATGATGGCAAACATACATTCACAATAGCAAAATGTAGACAAAACTATGTGGGTTAATAACCTTGAAACGAGTATTACATGGAAGTTGTTATATCTCTGGTAACTGGATGTTTGTTCGTTTATTTTCACCAACTTTTAGAGGAATAGGAAACACGGTATACCTTCAGGTTTCCTAATCAATGTTGTGTTGAAAGGTACATGATGTAAATATCTTGGGCTGTGTGATGCTCTGAGTCCTTGGCCAAGCACAGATAACAAGCCTCTCTGGAGCATCACCTAGGACACTGGCCCTCAGAGACCTGCAGTTGCCTCTAGTTATGACTGGCTGTATCCCCTTATTGGTCTCACATTAATAAAACAAA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0008378 galactosyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591217.2 False 3414 mRNA 0.46 2 29633391 29637493
TU2483664 False 1366 lncRNA 0.36 1 29634295 29635660
TU2483665 True 971 lncRNA 0.36 1 29634873 29635843

Neighbor

gene id symbol gene type direction distance location
LOC110509967 LOC106563487 coding upstream 9111 29610727 ~ 29624280 (+)
LOC110509964 LOC106563493 coding upstream 59947 29570335 ~ 29573444 (+)
LOC118945365 NA coding upstream 136106 29487508 ~ 29497285 (+)
LOC110509962 LOC106603154 coding upstream 196329 29433858 ~ 29437062 (+)
LOC110509959 LOC106563498 coding upstream 205523 29325241 ~ 29427868 (+)
LOC110509969 LOC106563485 coding downstream 1075 29638568 ~ 29645471 (+)
LOC110509970 LOC106563483 coding downstream 15025 29652518 ~ 29662236 (+)
LOC110509973 LOC106563482 coding downstream 29177 29666670 ~ 29675086 (+)
LOC110509974 nxf1 coding downstream 40291 29677784 ~ 29697939 (+)
LOC110509406 NA coding downstream 102284 29739663 ~ 29740669 (+)
G2173109 NA non-coding upstream 1159 29626559 ~ 29632232 (+)
G2173120 NA non-coding upstream 25546 29606747 ~ 29607845 (+)
G2173117 NA non-coding upstream 39100 29591963 ~ 29594291 (+)
G2173114 NA non-coding upstream 45919 29585594 ~ 29587472 (+)
G2173113 NA non-coding upstream 51667 29580614 ~ 29581724 (+)
G2173363 NA non-coding downstream 13837 29651330 ~ 29651986 (+)
G2173364 NA non-coding downstream 14521 29652014 ~ 29652226 (+)
G2173388 NA non-coding downstream 83691 29721184 ~ 29722775 (+)
G2173401 NA non-coding downstream 105767 29743260 ~ 29743543 (+)
G2173098 NA other upstream 73432 29559570 ~ 29559959 (+)
LOC110509373 LOC106563396 other upstream 953714 28678848 ~ 28681351 (+)
gigyf1b LOC105024601 other upstream 1320240 28277874 ~ 28313151 (+)
G2170458 LOC106563185 other upstream 2308626 27322105 ~ 27324765 (+)
LOC110509988 tmem261 other downstream 231645 29869091 ~ 29874237 (+)
G2173551 vps51 other downstream 256601 29894094 ~ 29896279 (+)
LOC110509998 LOC106563463 other downstream 315044 29952492 ~ 29956193 (+)
G2173675 NA other downstream 499230 30136723 ~ 30137320 (+)

Expression


Co-expression Network