G2173109


Basic Information

Item Value
gene id G2173109
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29626559 ~ 29632232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2483663
gttgtatggcattgaagcttgcctggagggttgttaacacagtgtccaaagaagggccataaGTATACACaatagtgtcgtctgcgtagaggtgaatcagagactcaccagcagcaagagcgacatcattgatgtatacaaagaagagagtcggtccaagaattgaaccctgtggcacccccatagagactgccagaggtccggacagcagaccctccgatttgacacactgaactctatcagagaagtagttggtgaaccaggcgaggcaatcatttgagaaaccaaggctgtcgagtctgccgatgaggatgcggtgattgacagagtcgaaagccttggccaggtcaatgaatatggctgcacagtaatgttttttatcgatggcggttaagatatcgtttaggaccttgagcgtggctgaggtgcatccatgaccaggtctgaaaccagattgcatagcagagagggtatggtgagattcgaaatggtcggtaatctgtttgttgcctacactttcgaagaccttagaaaggcagggtaggatagatataggtctgtagcagtttggggcaagagtgtccccccctttgaagagggggatgaccgcagctcctttccaatctttgggaatctcagacgacacgaaagagaggttgaacaggctagtaatagaggtggcaacaatttcagcagataattttagaaagaaagggtccagattgtctagcctggctgatttgcagtgtcccagaacttttttgagttagtgttgcaggaagcaaactTCTGCTTGGCGtttgcttttctaactgcctgtgtataattttgtctagcttccctgaaaagctgcatatcacgggggctgtttgatgctaatgcagaacgccataggatgtttttgtgttggttaagggcagtcaggtctggggagaaccaaggactatatctgttcctggttctaaatttcttaaatggggcatgcttatttaagatggttaggaaggcatttaaaaaaaaagaaccaggcatcctctactgacgggatgagatcaatatccttccaggataccccggccaggtcgattagcaaggcctgctcgctgaagtgtttcagggagcgtttgacagtgatgagttgaggtcgtttgaccgctgacccattacggatgtaggcaatgaggcagtgatcgctgagatcttggttgaagacagcagaggtgtatttagagggcaagttggttaggatgatatctatgagcgtgcccgtgtttacggctttggggaggtacctggtaggttcattgataatttgtgtgagattgagggcatcaagcttagattgtaggatggctggggtgttaagcatgttccagtttaggtcgcctatcagcacgagctctgaagttagatggggggcaatcagttcacatatggtgtccagagcacagctgggggcagagggcggtctatagcaggcggcaacagtgagagacttgtttttagagaggtggatttttaaaagtagaagttcaaattgtttgggtacagacctggatagtaggacagaactctgcaggctatctttgcagtagattgcaacaccgccccctttggcagttctatcttgtctgaaaatgttgtagtttgggatgaaaatttcagaatttttggtggtcttcctaagccaggattcagacacatctagaacatccgggttggcagaatgtgctaaagcagtgaataaaacaaacttagggaggaggcttctaatgttaacatgcatgaaaccaaggctattacggttacagaagttatcaaaagagagcgcctggggaataggagtggagctaggcactgcagggcctggattcacctctacatccccagaggaaaagaggaggagtaggataagtaggatatcaaccagctaattattggaatcaggtgcgctagattcGGGTTGTAGAGAAAACCTACCGGACGgtagctctctaggaacagggttggagagcccagctGTATACAATGTTATACAGTGCTCAGGATAACAGAAAGGGGCAATCCTTTGTAGCAGACTTAAAATGATGCCCCTTTTACTCTTATCTTCTGACGTGACGCCTTATCCCTTCTTTAGCCCTACAGTGTCTGCTCTGTGCTCCTATCTGCCTCTATAGGTTTGAATCTCTTTTACTACAATACTATGCATTGTTCTTTTAGAAATATTGATTTCATCTGTGAAAACGATAACAAAGCTTTATCATTGAGTACACTGTGAATCCCACTCTTCCTGCATTTTGGTTATAGTTCTCAGCCTTGGTCCTTAAGGTTAGACCCATCCTTGTATTTAATACGGAGGGTTGTTAAGTCGCCCATGAGTTCCTGTCTATCTGACTATGCCTTGGTTCCCTTTCACAAATTTTAGATTTACTGATCATTATTGCAAATTATGATCTATTAAGGTGCTGTTATGTATGACATGTGGACATATATTATATTAACGATCTCTTGGTGTTCACACACACTTGTCTGATTATTTGACCCCTATAGATGGTTGTTTCATTTGATTTAGGTGCAGAAAGAACTAGTTCGTCCCCAACCTCAAGACATACCAAAGGGTTCAGTTTGATGAGGGTGCTCTGTGATTGGCTAGACAAAACCTAGCGTGTTGCTGCTGTAAAAAACACCAgaaaggcctcccgg
>TU2483657
cttggttgaagacagcagaggtgtatttagagggcaagttggttaggatgatatctatgagcgtgcccgtgtttacggctttggggaggtacctggtaggttcattgataatttgtgtgagattgagggcatcaagcttagattgtaggatggctggggtgttaagcatgttccagtttaggtcgcctatcagcacgagctctgaagttagatggggggcaatcagttcacatatggtgtccagagcacagctgggggcagagggcggtctatagcaggcggcaacagtgagagacttgtttttagagaggtggatttttaaaagtagaagttcaaattgtttgggtacagacctggatagtaggacagaactctgcaggctatctttgcagtagattgcaacaccgccccctttggcagttctatcttgtctgaaaatgttgtagtttgggatgaaaatttcagaatttttggtggtcttcctaagccaggattcagacacatctagaacatccgggttggcagaatgtgctaaagcagtgaataaaacaaacttagggaggaggcttctaatgttaacatgcatgaaaccaaggctattacggttacagaagttatcaaaagagagcgcctggggaataggagtggagctaggcactgcagggcctggattcacctctacatccccagaggaaaagaggaggagtaggataagtaggatatcaaccagctaattattggaatcaggtgcgctagattcGGGTTGTAGAGAAAACCTACCGGACGgtagctctctaggaacagggttggagagcccagctGTATACAATGTTATACAGTGCTCAGGATAACAGAAAGGGGCAATCCTTTGTAGCAGACTTAAAATGATGCCCCTTTTACTCTTATCTTCTGACGTGACGCCTTATCCCTTCTTTAGCCCTACAGTGTCTGCTCTGTGCTCCTATCTGCCTCTATAGGTTTGAATCTCTTTTACTACAATACTATGCATTGTTCTTTTAGAAATATTGATTTCATCTGTGAAAACGATAACAAAGCTTTATCATTGAGTACACTGTGAATCCCACTCTTCCTGCATTTTGGTTATAGTTCTCAGCCTTGGTCCTTAAGGTTAGACCCATCCTTGTATTTAATACGGAGGGTTGTTAAGTCGCCCATGAGTTCCTGTCTATCTGACTATGCCTTGGTTCCCTTTCACAAATTTTAGATTTACTGATCATTATTGCAAATTATGATCTATTAAGGTGCTGTTATGTATGACATGTGGACATATATTATATTAACGATCTCTTGGTGTTCACACACACTTGTCTGATTATTTGACCCCTATAGATGGTTGTTTCATTTGATTTAGGTGCAGAAAGAACTAGTTCGTCCCCAACCTCAAGACATACCAAAGGGTTCAGTTTGATGAGGGTGCTCTGTGATTGGCTAGACAAAACCTAGCGTGTTGCTGCTGTAAAAAACACCAgaaaggcctcccgggtggttaagggcgctgtactgcagcgccagctgtgccatcagagtccctgggttcgcgcccaggctctgtcgtaaccggccgcgaccgggaggtccgtggggcgacgcacaattggcctagcgtcgcccgggttagggagggcttggtcggtaggggtgtccttgtctcatcgcgcaccagcgactcctgtggcgggctgggcgcagtgtacgctaaccaaggtggccaggtgcacggtgtttcctccggcgcattggtgcggctggcttccgggttggatgtgtgctgtgttaagaagcagtgcggcttggttcgtctctcccgagcccgtacgggagttgtagcgatgagacaagatagtagctactacaacaattggataccacgaaattggggagaaaaaggggtaaaattaaaaaataaataaatttaaaaaaacaccAGAACAACAATATGTGTGTTTAAAACTTGAACTTTTGTACTTGAGATTATGGCTTTCATATAAGTGTTCTATAGGATGAAGAGGTTCAACCTGAATCAGTTTATGCTATAAGTGTTTTGCTATAAAAGCATAATTTCCCTCAACACATTTTGGTGGAAAGACTGCCAGTAGCCCTTTTTCCAAATTTGTAAACACATTAGGTAAGAAATGCAAGAAATCTGAAATCTTAAAACCAAGAATGCCTTTGGTTAAGCTGTGTATAGTTTGGTCTTCCAAAGCAATGTAACATCCATTCATATTCATTTTGCAGTTAAATAGTTTGGTCTCTAAATACGTAATTGATTCTGGGAATTTTTTCCTGCCTACTTTGTAATGATGTGTTGATCTATATTTTTCTACATTTCTGTTTGTTCATGACGTGCACACATTTGTGTGTACGTGCATCTGAGTGAGTTCTTGACTGTTGATGTCTGGAAGAAGCACATCCAGTCATCTTACCTTTACCAGGTATTTCCGAAACAATGACCTCCAGCTGCGCTTAGTTTTGCTCTGTATTATTCAATCACTCACCAGACCTCACTATAGGTGTGCTGTGTGTCAACATGCCGTACTCCACTGTGACCTCCACAATGAGTTTCTCTTCCTGCAGTTCTTTTAAGTTAATCTGAATTACATCTTTCTAATGGGATCTTTTGTGAATGAGCCTTGTCAAAGAGATGCAGGGCTTACGCAAAGCAGGCATCCACACAATTCAGAAGCTTCCCTGAGGTAAAATTATTAGTCATACATTAGATAAAGAAAATAAAAGCTGTATAGACGTCACTTTAATCTCTGACTGCTTCTTGAACGTTCTCCCTGTAGTTCACGCAACGCAAAGGACTTAATACAGAACTTGTCACGTGATGAGTAAAGAATCTTCCATTTGTAGTTTGCACATGAAAAGAAGCAAACAATTTAAACAAAGATCTGTTGTATGATTTCCTTGGAACTTGTAAATCTGTGAATTGATGATTTGTGTGATTTTACATCTATTCATGTATGTATTGAATGCTTGTTTTCTACTGTTCTCTTATTTCCTGTTCCAAATATTGACATCTAGGATGATGCTGATAACCGTCTGATGGAAAAATGACAAATGAGAGACATCCTCCTTTATTAATGAGGAGGGTAAGAACTGTCCATAAGATGTGGGGAAACTATCAGaactgttctgtagtgttctcACCCTGTTGCTCTGCATCCTTGGGAGATCAAAAGGTCAGTTCCGACAGCCTCTGATGACTCTGTTGTAACACTCTCATTTTGTCCAACCCGTTGAACAATTGATTCTCATGAACAGATAATACTATTTTCATATTGTAGTAATGGGTCCCCTTCCCTGTATGTACAGTTTAATCTTCCTGGACCTTTGATTGGTGATCTTTGTATGGAGTGCAATGTGATTAATATGATGCTGCTTTGTTAGGCAGGCGTGATCAGCGCATCACATTCAGCTGATGGAAAGTTGTGAATTTTACTAAGAACAACTGATACGATCTGGACATGCATGTTCTCTACCCTGCTTATATTTCCTCTGATCAATCCAGACTGCAGTGTACCTGCTCAATGCCATGGTGCATGAGAAAGGATGTGGCatgaggtagcctagcggttaaaagcattggaccagtaaccgaaaggtcgctagaTGAAAAAACAAGATGAAAAATCTATgtgtgtgcccttgagcaaggcacttaactctaatatctcctgtaagttgctctacATAAGAGCATTCcactaaatgactcaaatgtaaatgtgttgaTCTATATCAGTATGACCGTGTGCACACGCATACAAACTGTATGGTTTTCACCCTGTTCATAATTGATGGCTCAGGGGGAGAATCTTTATGTTTGAGAACATTCTTCTGTCCTACAACTTACTGTGATAAAGAAACTGTGATATTGCTGTTCAGCGACAATAATAATCAGTGATGTTAATACCAACAATATTAATGGTTGATTACAGGATTACAATGCTGTATGTTATGAGAATCATCTACCCATTGTATATGAAGGACAAGTAAAATGGAGAGGATAATGATTCTGCAGCCACTCCAAAACATGTGCAGGACAAAAACAGATCGCTGGAATATAAAATCATCCACTGTGTATAATTTCTGGAAAATATGAAAAACCAGAACCGTTTAttggaatacatttttttttacatcaaaccA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2483663 False 2703 lncRNA 0.45 2 29626559 29629526
TU2483657 True 4173 lncRNA 0.42 2 29628024 29632232

Neighbor

gene id symbol gene type direction distance location
LOC110509967 LOC106563487 coding upstream 2279 29610727 ~ 29624280 (+)
LOC110509964 LOC106563493 coding upstream 53115 29570335 ~ 29573444 (+)
LOC118945365 NA coding upstream 129274 29487508 ~ 29497285 (+)
LOC110509962 LOC106603154 coding upstream 189497 29433858 ~ 29437062 (+)
LOC110509959 LOC106563498 coding upstream 198691 29325241 ~ 29427868 (+)
LOC110509968 LOC106563486 coding downstream 1159 29633391 ~ 29637493 (+)
LOC110509969 LOC106563485 coding downstream 6336 29638568 ~ 29645471 (+)
LOC110509970 LOC106563483 coding downstream 20286 29652518 ~ 29662236 (+)
LOC110509973 LOC106563482 coding downstream 34438 29666670 ~ 29675086 (+)
LOC110509974 nxf1 coding downstream 45552 29677784 ~ 29697939 (+)
G2173120 NA non-coding upstream 18714 29606747 ~ 29607845 (+)
G2173117 NA non-coding upstream 32268 29591963 ~ 29594291 (+)
G2173114 NA non-coding upstream 39087 29585594 ~ 29587472 (+)
G2173113 NA non-coding upstream 44835 29580614 ~ 29581724 (+)
G2173106 NA non-coding upstream 50804 29575253 ~ 29575755 (+)
G2173363 NA non-coding downstream 19098 29651330 ~ 29651986 (+)
G2173364 NA non-coding downstream 19782 29652014 ~ 29652226 (+)
G2173388 NA non-coding downstream 88952 29721184 ~ 29722775 (+)
LOC110509406 NA non-coding downstream 107431 29739663 ~ 29740669 (+)
G2173098 NA other upstream 66600 29559570 ~ 29559959 (+)
LOC110509373 LOC106563396 other upstream 946882 28678848 ~ 28681351 (+)
gigyf1b LOC105024601 other upstream 1313408 28277874 ~ 28313151 (+)
G2170458 LOC106563185 other upstream 2301794 27322105 ~ 27324765 (+)
LOC110509988 tmem261 other downstream 236906 29869091 ~ 29874237 (+)
G2173551 vps51 other downstream 261862 29894094 ~ 29896279 (+)
LOC110509998 LOC106563463 other downstream 320305 29952492 ~ 29956193 (+)
G2173675 NA other downstream 504491 30136723 ~ 30137320 (+)

Expression


Co-expression Network