RNA id: TU2484013


Basic Information

Item Value
RNA id TU2484013
length 336
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G2173403
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29745545 ~ 29745880 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTATTTAAAGAGAATCTAATGAAGTCACAACACACTTGAGAGTTGataagagaggaagggaggatcaTTGAGAAATAGAACAGGTGGCTATAGGTGACAAAGTGTAGAGTGCAGCCCATTTGCTTGTAGGTTGTATTCTCCCATTTTGGGCCCGATCAGTTTTTACACACCTCAGCCCTGGTCTTCTTGGACAGGACCCGAAGCCAGTTTGCAACCATGGACAGGATGGAAGCAAAGTAGGCCAGGCCCAGCAGGATCCAGAACCACACCAGGGGCTTGTACCAGTGGTCTTTACCACCATCTCCACTATCACCTGACAGAGATAAGCAATAGGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484011 lncRNA upstream 2002 29743260 ~ 29743543 (+) True G2173401
TU2484007 lncRNA upstream 5677 29739663 ~ 29739868 (+) True LOC110509406
TU2483995 lncRNA upstream 22770 29721184 ~ 29722775 (+) True G2173388
TU2483967 lncRNA upstream 93319 29652014 ~ 29652226 (+) True G2173364
TU2483966 lncRNA upstream 93559 29651330 ~ 29651986 (+) True G2173363
TU2484017 lncRNA downstream 6403 29752283 ~ 29752540 (+) True G2173407
TU2484018 lncRNA downstream 9177 29755057 ~ 29755349 (+) True G2173408
TU2484027 lncRNA downstream 19635 29765515 ~ 29766999 (+) True G2173417
TU2484030 lncRNA downstream 28407 29774287 ~ 29775778 (+) True G2173420
TU2484032 lncRNA downstream 37385 29783265 ~ 29783578 (+) True G2173422
LOC110509406 mRNA upstream 4876 29739777 ~ 29740669 (+) False LOC110509406
XM_021591227.2 mRNA upstream 47606 29677784 ~ 29697939 (+) True LOC110509974
XM_036967703.1 mRNA upstream 70459 29666732 ~ 29675086 (+) False LOC110509973
XR_005040524.1 mRNA downstream 76560 29822440 ~ 29825694 (+) False LOC118945359
XM_036967933.1 mRNA downstream 98340 29844220 ~ 29857693 (+) False cnih2
XM_036967931.1 mRNA downstream 98344 29844224 ~ 29857693 (+) False cnih2
XM_036967932.1 mRNA downstream 98344 29844224 ~ 29857693 (+) False cnih2
XM_036967930.1 mRNA downstream 98344 29844224 ~ 29859442 (+) True cnih2
TU2483968 other upstream 83311 29652569 ~ 29662234 (+) True LOC110509970
TU2483674 other upstream 158073 29585594 ~ 29587472 (+) False G2173114
TU2483638 other upstream 185586 29559570 ~ 29559959 (+) True G2173098
TU2482435 other upstream 1065868 28678848 ~ 28679677 (+) True LOC110509373
TU2482164 other upstream 1432394 28303205 ~ 28313151 (+) True gigyf1b
TU2484185 other downstream 123258 29869138 ~ 29871317 (+) False LOC110509988
TU2484176 other downstream 148214 29894094 ~ 29896279 (+) True G2173551
TU2484191 other downstream 206657 29952537 ~ 29953810 (+) True LOC110509998
TU2484310 other downstream 390843 30136723 ~ 30137320 (+) True G2173675
TU2484414 other downstream 573768 30319648 ~ 30323615 (+) True G2173754

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000325_00092955_00107053.mRNA True 1430 mRNA 0.46 6 CI01000325 92881 ~ 107086 (+)