RNA id: XM_036967931.1


Basic Information

Item Value
RNA id XM_036967931.1
length 2009
RNA type mRNA
GC content 0.47
exon number 7
gene id cnih2
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29844220 ~ 29859442 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gagagagaaaaagggagcagagggaggggtagaTAGAGACAAACAAGGGAAGCcaacaaaaaaatatttggaGCTTCCCCTGCCCCCTCAACCATCTCTGGGGAACAAGGGAATACGGCAACGGTTCAAAGCCAGGGATAGAgggaccgagagagaaagagagagagagaaagagggagggagagactgttGAATGCACTTGGCCGGTATATTCTAGGGTGATCCAAATCTTGCTTTATCAGACCgtctgagagagagaagaagagactgaGGAGGACAGAACATGAGGGAGAGTCTTTCTTGGTCTGTTTTCAAAATCGTTCCATTCTTTtttagagaaagagaagagaaaacatAAGGGGGAGCTTTGGAGAGAGAAAAGCGAAAGAGGATGGAGGGGGACATGAAAAAGAGGGGAATTAAGGAACTTAGAGACTTCTAAGGGCTGTGGAGATGTTTTGCCTTTCTTAAGAAAAAAGACTTGCACCCAAATAAGagcaaaaaatgttttaacatCTAAACATAGTTGATTCTCTAAATGCTGTTTTTCCACCCTGCAAGTGAGCACTGAAAAGCATATGCGTGAAGAAATCTGATGGACGCGACTGAGATAGATAGAGAAAGGCAAGGAAGAGAATTCTGACATGGTGTCGACCCAAATTGACAGAGTGGGAAGAGGAAGGAGTTGGATATTCAGTGATAGACGCATCTGCCACCAAACACAGTCCAGTGTGTCAGGTAGTCACTTACTAGCTGTGTCACTGTGAGCAAGGTGTGTGGATATTGTGCAAAGTGGAGGTTACTGGAAGGGGGAGGGGACAGACACAAAGTGCACAAAACCCCTGTCTAGAATCAGAGGAGGCTGGGACCAGAGGAAAGAGCATTACTCAGCTGTAGCTGTTCTCCATGAATAACTGTGCCTGTTGACCGCTTTGCAAATTGTATGTGTGACAGAGAAGAAAATATTTTGCACAGACTCATGAAAAGGAAAGAGGAACTCAAGCAGAAGGAGCAACCTAGAtaagcagaaatagagagaccACAGCTGATAGACTGGAGAGTGGAGCAGGGATTTTTTCTTCCAACACAGTACTTCAGCTCCTCACCTGGACAATTTGGGCTCTCAATACAACGTAAGAGGGGAAGGGAGTCAGAGAGTCAAGGGCAGGGAGTGGAAGAACAGACAAAAACCTCCTGAGGAAGGAGAGATAGTcatcaatagagagagagaggaggggaagttcCCCCTCTCTCGACCCAACTCGTTGTCAGGCTGGCTGACACAGCCATGGCGTTCACCTTCGCGGCCTTCTGCTACATGCTCACCTTAGTGCTGTGTGCCGCACTCATCTTCTTCGTCATCTGGCAGATTATTGCGTTTGATGAGCTGTGCACAGACTTCAAGAACCCAATCGATCAGAGCAACCCCACCAGAGCGAGGGAAAGAATTCTGAATATTGAAAGAATCTGCAACTTGCTGCGGAAGCTGGTGGTGCCAGAGTACTCCATACATGGGCTGTTCTGCCTGATGTTCATGTGTGCTGGGGAGTGGGTCACCCTGGGCCTAAACATCCCCCTGCTCTTCTACCATCTCTGGAGgtTTTTCCATCGGCCGGCAGATGGGTCAGAGGTAATGTATGACCCTGTCAGTGTGATGAATGCAGACATCCTGAACTACTGTCAGAAGGAGTCCTGGTGTAAGCTGGGCTTCTACCTGCTCTCCTTCTTCTACTACCTGTACAGTATGGTCTACGGCTTGGTGAGTTTCTAAACACAGAATAGAAGACAAAACGACAAAGAGGAGATTGAAAGACAGTAAAAGAGACAGAGCATGCAAGACTAAGACTGGGTGATGTCACTCACCCTTCTTTCTCACCACCCATTACTCCATCACAGACCCTGTTTTGCTCTCCTCAAATCTTTGGATGGAGGGACAAACATCGGAGGACATCGTGAGGAAATTAGGCAAAGTAAAGATACTTTTTTGAGGCTGCTCAGACACTGCCGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484183 lncRNA upstream 4853 29839106 ~ 29839371 (+) True G2173558
TU2484180 lncRNA upstream 7723 29836141 ~ 29836501 (+) True G2173555
TU2484179 lncRNA upstream 8142 29831894 ~ 29836082 (+) True G2173554
TU2484172 lncRNA upstream 15173 29828811 ~ 29829051 (+) True G2173548
TU2484170 lncRNA upstream 16219 29827772 ~ 29828005 (+) True G2173546
TU2484186 lncRNA downstream 13966 29871659 ~ 29874207 (+) True LOC110509988
TU2484195 lncRNA downstream 20082 29877775 ~ 29878698 (+) True G2173570
TU2484205 lncRNA downstream 21515 29879208 ~ 29879475 (+) True G2173580
TU2484206 lncRNA downstream 22259 29879952 ~ 29880235 (+) True G2173581
TU2484178 lncRNA downstream 34294 29891987 ~ 29892424 (+) True G2173553
XR_005040524.1 mRNA upstream 18530 29822440 ~ 29825694 (+) False LOC118945359
LOC110509406 mRNA upstream 103555 29739777 ~ 29740669 (+) False LOC110509406
XM_021591227.2 mRNA upstream 146285 29677784 ~ 29697939 (+) True LOC110509974
XM_036967705.1 mRNA upstream 169138 29666734 ~ 29675086 (+) False LOC110509973
XR_002471519.2 mRNA downstream 11398 29869091 ~ 29874237 (+) False LOC110509988
XM_021591242.2 mRNA downstream 11421 29869114 ~ 29871465 (+) False LOC110509988
XM_021591245.2 mRNA downstream 28596 29886289 ~ 29888742 (+) True znhit2
XM_021591252.2 mRNA downstream 57164 29914857 ~ 29925677 (+) False LOC110509993
XM_036967421.1 mRNA downstream 57459 29915152 ~ 29925677 (+) False LOC110509993
TU2483968 other upstream 181990 29652569 ~ 29662234 (+) True LOC110509970
TU2483674 other upstream 256752 29585594 ~ 29587472 (+) False G2173114
TU2483638 other upstream 284265 29559570 ~ 29559959 (+) True G2173098
TU2482435 other upstream 1164547 28678848 ~ 28679677 (+) True LOC110509373
TU2482164 other upstream 1531073 28303205 ~ 28313151 (+) True gigyf1b
TU2484185 other downstream 11445 29869138 ~ 29871317 (+) False LOC110509988
TU2484176 other downstream 36401 29894094 ~ 29896279 (+) True G2173551
TU2484191 other downstream 94844 29952537 ~ 29953810 (+) True LOC110509998
TU2484310 other downstream 279030 30136723 ~ 30137320 (+) True G2173675
TU2484414 other downstream 461955 30319648 ~ 30323615 (+) True G2173754

Expression Profile