RNA id: XM_021591227.2


Basic Information

Item Value
RNA id XM_021591227.2
length 2234
RNA type mRNA
GC content 0.50
exon number 21
gene id LOC110509974
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29677784 ~ 29697939 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATTACCAGAGGGTCGTGAGCAAAGCGAGTTCGAAACCATTGCACATGCTCAGACGGCGGGGCCGTAAAGCTACATTGCATGTTACGAACAAAGCGAATGTCTTTGCTAACTATTCACGGACGATAAACGCACATTTGCTGTACATATAGAACTAACAATACCCACTATTATTGGAGTTACGTGGGTGTTCGGTTCCTGACTATGTCAACAGCCGACGATTCACGTTATAACGATCACGATGACCGAGTTGGAGGACAAAAGGTTCGCAACCGTAAAGGCAGAGGGCCTTTCAGGGCCCCTATGTATAGTGACCAGGGGCCAGTAGGGCCAAGACCAAGACATCGTGGTAGCCAAAGAGGCGGCGGCGGCCCGGGACCCAGAGCGCGATTCGACGATGAGGATGGAGATGTGGCAATGGCGGACAGCAACTCCCAAGATGGATCCTCCCAACACAGATTTAACCCTTATGGAAGACCAAATCGGCGTGGGGACGACCGATTTGACCGGGGCCgcagaggtggtggtggaggtcaCAGGGGTCGTGGGAATAACAAAGGAggggatggaggtggaggtggcCGCAAGAACTGGTTCAAGATGTCTGTCCCCTATGGAAAGAAATACGACAAAGACTGGCTGATAACAGCACTGCAGAATATCTGCTCCATGCCCTTCACCCCAGTACATTACCACGTAGAGGGAAACCGAGCAGAGTTCTTTATTGATGATTCCACGACTGCGAATGCCTTGTTTAAGGTATCACGGAAGATCACAGACAAAGAGGGCTACAAGGTGACTGTACTGATGAATCCCTGTCCTCCACCCTCCTTTCTTCAGTCTGAACTAAAGCCAGCTGATCTGGAGCACCTGAAGCAATGCATGGCTAAACGTTTTGATGGCTCTCAACAAGCGCTGGACTTGAACAACATCCGGATAGACCCAGACCTGGTGTCCCAGAACATTGATGTGACTTTGAACAGAAAGAACTCCATGCGTGCTGTTATTAAGATAATTGAGGAGAATATTCCAGAGCTTGTTTGTCTGAACCTTAGCAACAACAAGCTATTTAGGCTGGATGACCTGTCAGAGCTGGTCAACAAGGTTCCCAACCTGAAGACACTCAACCTTTCTCATAACGAGTTAAAGACAGAGCGCGAGCTGGACAGGATCAAGGGTCTTAAGCTGGTGGAGTTATGGCTGGAGAGGAACCCCCTTTGTGACTATTTCAAGGACCAGGCTTCATACATCAGCGAGGTGAGAGAGAGGTTCCCCAGGCTTCTCAAACTGGACGGTCAGGATCTCCCCCCGCCCATAGTCTTTGATGTGGAGGTGACTCCTGCCGCCCTTCCACCTTGCAAGCCCAGCTACTTCTGCTCTGAAGAGATCAAGACTCCCATCGTTGGCTTCCTACAACAatactacagtgtgtatgactCCGGAGACAGACAGCCTTTGTTAGATGCCTACCACGATGGAGCAACCTTCTCCTTGAGCATGCCCTTCACCATGCAGAACCCCTCCAGGTGCAGTCTTGGCGATTACCATAAAGACAGTCGCAACCTGAAAAAGCTCAAGGATCCCACCACACGATTCCGCTTACTGAAGCACACTCGTCTGAATGTGGTGGCTTTCCTGAGCGAACTGCCCAAAACGCAGCATGACACTGCATCTCTAATTGTGGACGTCAACACCTTCACCAACACATTACTGTCGTTCACGGTCACTGGAGTGTTCAAGGAAGTTGAAGGTAAATCCCGCGACTCTGTGAGAGCTTTCTGTCGGGTGTTTGTCACAGTGCCAGCTGGAGGGACAAGTCTTTGCATAGTGAATGACGAGCTGTTTGTGCGCAATGCTACGACTGAGGAGATCCGCCGGGCCTTTGTGGCACCTGcccccaccccatccagcagTCCTGTCCCCACCCTCTCAGCCCCCCAGCAAGAGATGCTCTCTGCCTTCTCACTCAAGTCCGGCATGAATCTTGAATGGTCCCAGAAGTGCCTACAGGACAATGAGTGGGATTTCAACCGAGCAGGGCAGGTCTTCACAGACCTCAAGGCTCATGGAAAGATCCCAGATGTCGCTTTCATAAAGTGAACAGGAATGGCTGTGAAGCTTTTTAATTATTGTCATTGGTCTTATTTCTGTTGATTCTTATGCAGTTATCCTCCTGGATTACAAGATAACATATACTTCATTATTTGTATAATTAAACATGATTTAACGTGTTCAAA

Function

GO:

id name namespace
GO:0006406 mRNA export from nucleus biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0000166 nucleotide binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K14284 NXF, TAP, MEX67; nuclear RNA export factor

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2483967 lncRNA upstream 25558 29652014 ~ 29652226 (+) True G2173364
TU2483966 lncRNA upstream 25798 29651330 ~ 29651986 (+) True G2173363
TU2483665 lncRNA upstream 41941 29634873 ~ 29635843 (+) True LOC110509968
TU2483664 lncRNA upstream 42124 29634295 ~ 29635660 (+) False LOC110509968
TU2483657 lncRNA upstream 45552 29628024 ~ 29632232 (+) True G2173109
TU2483995 lncRNA downstream 23245 29721184 ~ 29722775 (+) True G2173388
TU2484007 lncRNA downstream 41724 29739663 ~ 29739868 (+) True LOC110509406
TU2484011 lncRNA downstream 45321 29743260 ~ 29743543 (+) True G2173401
TU2484013 lncRNA downstream 47606 29745545 ~ 29745880 (+) True G2173403
TU2484017 lncRNA downstream 54344 29752283 ~ 29752540 (+) True G2173407
XM_021591226.2 mRNA upstream 2698 29666670 ~ 29675086 (+) False LOC110509973
XM_021591223.2 mRNA upstream 2698 29666674 ~ 29675086 (+) False LOC110509973
XM_021591224.2 mRNA upstream 2698 29666677 ~ 29675086 (+) False LOC110509973
XM_021591221.2 mRNA upstream 2698 29666732 ~ 29675086 (+) False LOC110509973
XM_036967703.1 mRNA upstream 2698 29666732 ~ 29675086 (+) False LOC110509973
LOC110509406 mRNA downstream 41838 29739777 ~ 29740669 (+) False LOC110509406
XR_005040524.1 mRNA downstream 124501 29822440 ~ 29825694 (+) False LOC118945359
XM_036967933.1 mRNA downstream 146281 29844220 ~ 29857693 (+) False cnih2
XM_036967931.1 mRNA downstream 146285 29844224 ~ 29857693 (+) False cnih2
XM_036967932.1 mRNA downstream 146285 29844224 ~ 29857693 (+) False cnih2
TU2483968 other upstream 15550 29652569 ~ 29662234 (+) True LOC110509970
TU2483674 other upstream 90312 29585594 ~ 29587472 (+) False G2173114
TU2483638 other upstream 117825 29559570 ~ 29559959 (+) True G2173098
TU2482435 other upstream 998107 28678848 ~ 28679677 (+) True LOC110509373
TU2482164 other upstream 1364633 28303205 ~ 28313151 (+) True gigyf1b
TU2484185 other downstream 171199 29869138 ~ 29871317 (+) False LOC110509988
TU2484176 other downstream 196155 29894094 ~ 29896279 (+) True G2173551
TU2484191 other downstream 254598 29952537 ~ 29953810 (+) True LOC110509998
TU2484310 other downstream 438784 30136723 ~ 30137320 (+) True G2173675
TU2484414 other downstream 621709 30319648 ~ 30323615 (+) True G2173754

Expression Profile