RNA id: XM_021591221.2


Basic Information

Item Value
RNA id XM_021591221.2
length 2796
RNA type mRNA
GC content 0.43
exon number 11
gene id LOC110509973
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29666670 ~ 29675086 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GGTTGCTTTGCTCTTGAAGTTTGTCCTGTCGTCCGTATCGTAGTTACAGGTTTCCTGTAGTTTTTTTCCTttaggaagtagctagctagagagaGTAAATATAATTGTGTATGTCCATAACTATTGTAAGACTTTTTAATTTTAATGATCACAATTACGTGCATGTTAATTGTTAATATATAGTGCTGCAGCTTTACTATAGACGAAAATCTTGCTACAGAAatattaaaggcccagtcaacAGCTCATTATCAGATAGGACCCGCAGTAGACAAAGAAAACGTTAATTAGCTAAGTAATTAATGTCATATTAAGGGCATGtggaataatatatatatatttgtcacaAGGGGTTTTCTTCAGGATGAGCAGGCCAATGTGGGATTTGTTAAGTGGGCTTCCTCCAATTAACAGGGAGCCATAACCCTcaaaagaaaatatatttttttccaaggaagcagagagaggggcaTTTGGCAGGAGCCACAGGAATAGGGCAGTGAAATTTCAGGGAGTGGTGTGGAACGTCAGGACCAGAGTCAGGAAGAGTCAGTGCTAGGTCAGTCACCATGGGTGGTGTAACGGGACCAGTTTTCCTGTGGCTACAGGATGTGTTAGGGGTAACTCTCCTCAGAGCCCGCAGGACTCTACTGCAGGCTGCCATCCTCTCCTGCGTTCTAGTGCTGCTGGTCTGGGTGGCCATCTTCCTCCATGGCAGCTTCTACTACTCCTATATGCCCACCGTCAGCTTTTCTACACCAGTGCACTACCACTACAGTACCGATTGTGATGCTTCCAATTCAGTCCTCTGCTCTTTCCCCATGGCTAACATCTCGCTGCTAAAGAATGGCAAAGACCAGGTTATGATTTATGGTCAGCCATATCGAATCTCTTTAGAGTTGGAAATGCCTGAGTCGCCAGTCAACAAACATCTTGGCATGTTCATGATTAAGATGTCTTGCTACACCAAGGACGGCCAGACAGTTGCAGCTGTGGCGCGCTCTGCTATGCTGCACTACCGATCTGGTCTCCTCCAGACATTGaatactctactgttctctcctctcctgctgactGGGATGACGGAGCAGAAGCAGCTTGTTGAGGTTGAGCTCTTCTCAGACTACAAGGCCAATTCTTATCAACCCACTGTTGGTGCGGTCATTGAGATCCAGTCTCGGCGTGTGCAAATCTATTCAGCTCAGCTCAGGATCCATGCTTTCTTCACTGGTATCAGATACCTCCTGTACAATTTCCCATTGACGTCTGCAGTGATTGGCGTGGCCAGCAACTTTGCCTTCCTCAGTGTCGTTGTGCTCTTCGGATACCTACAGTTTATATGGGGGGGACTTTGGCCTCCTGAGCAGGTCAGGgTTATGATGGGAGACACGACTCGCCTGCAGCGTAGAAGAGAAGAGGCTCGGAAGCGCATGTCCTTCTCACAGACTCAAATGCCTCAGAAAGATAATGATCGTGTGGCTGAGCAGTTGGAAGAACCTAGACAACAAGCATCAGAAATAAAGAAAGtgGAGCTGGAAACACCAGATGTGATTGGTTCCCTGAACAAGCCCTCTGGTTTGCCAGAGAATCAAACAGCTCTAGAGTCATCATCAGATGTGCCCCTGGAGGCTCCTCAGATTAACAAGACCGATGCAAGTCAGGAGGAGCCTGCTGATCCGGAGGATAGAGGTGCAGGAGCAGTCCTGTTGGAGGGACCCCAGGTACCTCAGCCAGGGGAATCTACGCTGCGTCAGAGACAGGGACCCTGGATGAGTCTCTGAACCATGGATCATCGCTCAGACATTCAAACGCTCACAGGTCCCTCAATGTGCCTTTCACCgacaggcaaagagagagagattgatgtaTGGATTGAAGCAGATAGATTGACAGACTGACTCCCACAAACACCCTGCACAAATATTCCCTATAGCCTATCACTTTACTTAGCATGTACCGTAATTTAATAATAatcatataatataataatatatgccatttagtagAGGCTTTTATCTAAAAAATGACTTTGGACTGTGGCATAATAGCTATGCTCTTTGATTTTTCAAAGATCAACCAGTGTCAAGGTTATAAGCCTTCTTTAGTTAGGCAAATATTTGTAGGATTAAGCTCAATCCTGACTCTTGCATGTCCTTCAGAGCAATGAAAATAATCACTCCGGTCTTTAAGCACTTATTTAATTCCCTAGCCTGCATCATTGTAGCAGAGACGGTTGTTCAGCCTTTTTGTTTTACGAATGAGTCTTTAAGGAATGTGATTGAGCAGGTACACAAGCATAGTTGAGAATGCCTTTTGTGCCTGTGATTGAAGCCTACGGTTACCATAAGAATCAGAGTGCCCTGAGCAGCAGAATGATGACCCTGCAGATTACACTGTTACACATTTAAAGTTATTCATCTTAAATGCAAGGAACATGCATTATGTTTACGCCTCTGTAGAAGGTTATTGTATAATTTTCCTTGAGGAAATATGCCTTTTAGAGCTATTACAGGGACCATCACAtgttgaatttaatttaattgggcTGAAACATATACAGCAAGGTGTACATTCTATTCCCAAAGGATAGCACTTAAAAGTATTTATTAAAGCACTTGTTTCCAAAGTGGTCCTTAATGTTACTTTGTTTTTAAATTAATATGTATTTTTTCTGTTTTAGATAACTAAATGTTTCAAGGAGCAATGAAGGATATGTTAAGTTACAATTGGAAGTTTTGTTGAAATGTACTCATATGAAAAAAGTGTTGTAGAAAATAAATAAGATATGGTCTGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2483967 lncRNA upstream 14506 29652014 ~ 29652226 (+) True G2173364
TU2483966 lncRNA upstream 14746 29651330 ~ 29651986 (+) True G2173363
TU2483665 lncRNA upstream 30889 29634873 ~ 29635843 (+) True LOC110509968
TU2483664 lncRNA upstream 31072 29634295 ~ 29635660 (+) False LOC110509968
TU2483657 lncRNA upstream 34500 29628024 ~ 29632232 (+) True G2173109
TU2483995 lncRNA downstream 46098 29721184 ~ 29722775 (+) True G2173388
TU2484007 lncRNA downstream 64577 29739663 ~ 29739868 (+) True LOC110509406
TU2484011 lncRNA downstream 68174 29743260 ~ 29743543 (+) True G2173401
TU2484013 lncRNA downstream 70459 29745545 ~ 29745880 (+) True G2173403
TU2484017 lncRNA downstream 77197 29752283 ~ 29752540 (+) True G2173407
XM_021591219.2 mRNA upstream 4496 29652518 ~ 29662236 (+) False LOC110509970
XM_021591218.2 mRNA upstream 21261 29638568 ~ 29645471 (+) True LOC110509969
XM_021591217.2 mRNA upstream 29239 29633391 ~ 29637493 (+) False LOC110509968
XM_021591216.2 mRNA upstream 42452 29610727 ~ 29624280 (+) True LOC110509967
XM_021591204.2 mRNA upstream 93288 29570335 ~ 29573444 (+) True LOC110509964
XM_021591227.2 mRNA downstream 2698 29677784 ~ 29697939 (+) True LOC110509974
LOC110509406 mRNA downstream 64691 29739777 ~ 29740669 (+) False LOC110509406
XR_005040524.1 mRNA downstream 147354 29822440 ~ 29825694 (+) False LOC118945359
XM_036967933.1 mRNA downstream 169134 29844220 ~ 29857693 (+) False cnih2
XM_036967931.1 mRNA downstream 169138 29844224 ~ 29857693 (+) False cnih2
TU2483968 other upstream 4498 29652569 ~ 29662234 (+) True LOC110509970
TU2483674 other upstream 79260 29585594 ~ 29587472 (+) False G2173114
TU2483638 other upstream 106773 29559570 ~ 29559959 (+) True G2173098
TU2482435 other upstream 987055 28678848 ~ 28679677 (+) True LOC110509373
TU2482164 other upstream 1353581 28303205 ~ 28313151 (+) True gigyf1b
TU2484185 other downstream 194052 29869138 ~ 29871317 (+) False LOC110509988
TU2484176 other downstream 219008 29894094 ~ 29896279 (+) True G2173551
TU2484191 other downstream 277451 29952537 ~ 29953810 (+) True LOC110509998
TU2484310 other downstream 461637 30136723 ~ 30137320 (+) True G2173675
TU2484414 other downstream 644562 30319648 ~ 30323615 (+) True G2173754

Expression Profile