RNA id: TU2484172


Basic Information

Item Value
RNA id TU2484172
length 241
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G2173548
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29828811 ~ 29829051 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctgaatccaatcgagaatctgtggaaagaactgaaaactgctgttcacaaatgctctccatccaacctcactgagctcgagctgttttgcaaggaggaaggggaaaaaatgtcagtctctcgatgtgcaaaactgatagagacataccccaagcgacttacagctgtaatcgcagcaaaaggtggcgctacaaagtattaacttaagggggctgaataattttgcacgcccaatttttcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484170 lncRNA upstream 806 29827772 ~ 29828005 (+) True G2173546
TU2484067 lncRNA upstream 5773 29822822 ~ 29823038 (+) True LOC118945359
TU2484038 lncRNA upstream 40060 29788453 ~ 29788751 (+) True G2173428
TU2484036 lncRNA upstream 41450 29787031 ~ 29787361 (+) True G2173426
TU2484032 lncRNA upstream 45233 29783265 ~ 29783578 (+) True G2173422
TU2484179 lncRNA downstream 2843 29831894 ~ 29836082 (+) True G2173554
TU2484180 lncRNA downstream 7090 29836141 ~ 29836501 (+) True G2173555
TU2484183 lncRNA downstream 10055 29839106 ~ 29839371 (+) True G2173558
TU2484186 lncRNA downstream 42608 29871659 ~ 29874207 (+) True LOC110509988
TU2484195 lncRNA downstream 48724 29877775 ~ 29878698 (+) True G2173570
XR_005040524.1 mRNA upstream 3117 29822440 ~ 29825694 (+) False LOC118945359
LOC110509406 mRNA upstream 88142 29739777 ~ 29740669 (+) False LOC110509406
XM_021591227.2 mRNA upstream 130872 29677784 ~ 29697939 (+) True LOC110509974
XM_036967705.1 mRNA upstream 153725 29666734 ~ 29675086 (+) False LOC110509973
XM_036967933.1 mRNA downstream 15169 29844220 ~ 29857693 (+) False cnih2
XM_036967931.1 mRNA downstream 15173 29844224 ~ 29857693 (+) False cnih2
XM_036967932.1 mRNA downstream 15173 29844224 ~ 29857693 (+) False cnih2
XM_036967930.1 mRNA downstream 15173 29844224 ~ 29859442 (+) True cnih2
XR_002471519.2 mRNA downstream 40040 29869091 ~ 29874237 (+) False LOC110509988
TU2483968 other upstream 166577 29652569 ~ 29662234 (+) True LOC110509970
TU2483674 other upstream 241339 29585594 ~ 29587472 (+) False G2173114
TU2483638 other upstream 268852 29559570 ~ 29559959 (+) True G2173098
TU2482435 other upstream 1149134 28678848 ~ 28679677 (+) True LOC110509373
TU2482164 other upstream 1515660 28303205 ~ 28313151 (+) True gigyf1b
TU2484185 other downstream 40087 29869138 ~ 29871317 (+) False LOC110509988
TU2484176 other downstream 65043 29894094 ~ 29896279 (+) True G2173551
TU2484191 other downstream 123486 29952537 ~ 29953810 (+) True LOC110509998
TU2484310 other downstream 307672 30136723 ~ 30137320 (+) True G2173675
TU2484414 other downstream 490597 30319648 ~ 30323615 (+) True G2173754

Expression Profile