RNA id: TU2484030


Basic Information

Item Value
RNA id TU2484030
length 1455
lncRNA type antisense_over
GC content 0.36
exon number 2
gene id G2173420
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 29774287 ~ 29775778 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

AGGGAAATTACCGCTTTTATTGGACAGCAGACCAAATACTCCAGAGAAGAATATGCACATGATAATAATCAACAAAACAGCAATGACACTTAGAATTTTATTGATAATTGTAGGGGAGTAGAAGCATATTGTTTACTTCATTACACCGAAAGAAATGGAAAACATTTGTAGTTTGTATATACATTAAAAGTTGAGTTCCACCCAGGTTCTAAACATCagcaggtgtgtttgtgtgcaatCACAAGTTCTTGATCTTAAAAGAGGTTAAGGATCAGCCCCCTTTTTTTctattttcgcctaaaatgacatacccaaatctaactgcctgtagcaaggatatgcattttcttggtaccatttgaaaggaaacatagaagtttgtggaaatgtgaaaggaatgtaggagaaaaACACATTAGAGCTGgtaaaatacaatatattttatatactgtatttttctgtaccatcatctttgaagatgcaagagaaaggccataatttAACCAGCCCAGGTGTAATCTGgatattggccactagatggcagtgtatgtgcaaagttttagtctgattcaatgaaccattgcatttctgttcaaaattttatatcaagactgcccaaatgtgcctaatatgtttattaataactatgttcaaaactgtgcaatCGCCTCagacaatagcatggtattctttcactgaaatagctactgtaaattggacaatatcagatatgtctatgtcctgggaaatgtttgttacttacaacctcatgctaatcgcattagcctacgttagctcaaccgtcccgcaggggacccaccaatcctgaagaagttttaatggTCAATAGAAAATCAAGGCATTCAGACAGCATCCCTTTAGAATCTAAAATCCTGACAATAATTCCTTCGTACAACAGGCCAGCTCATCCAAAGACCTAATTATGAGGCCTCCTTAAAAACATTAGCCTAGTATCGCAACCCTTAAGCAAAGATAATGTAAAAAATAACTGCAAGGTGAAGTAATTTTAAAATCTTGTTTTAAAAGAAAGCAaacaaaacaacccaaacagttGTAAAAACATTACTACTTCAATGAAATGGTTGATGAAAGCCTGGTATGGTTACCACAGTTGTTTAAGATTTAATACCTGTCTGTCCATTACACACAGAGGATGAACATAATGGTCAATATATTGTCTTGTCACATCAGAAGAAAAGAAAGCTATAGAATGCAGGTTATACATTTCACTAATAACGTTGCTGGTGAAGTTTTTGCTTTTCTGCAGAACAGACTTTGGGAATTTAGCCCAAGGTTTATGGTCATCCAAGTATTCATCAACATCATTCTTCTCCCAATCAGCTGATGTAATGGCAAGAAAACCAAAAGATATCAGTTCCCAAACTGATCAGAACAGCTTGATCATGCTTTCTCTGGATTTCCCAACTCCAACCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484027 lncRNA upstream 7288 29765515 ~ 29766999 (+) True G2173417
TU2484018 lncRNA upstream 18938 29755057 ~ 29755349 (+) True G2173408
TU2484017 lncRNA upstream 21747 29752283 ~ 29752540 (+) True G2173407
TU2484013 lncRNA upstream 28407 29745545 ~ 29745880 (+) True G2173403
TU2484011 lncRNA upstream 30744 29743260 ~ 29743543 (+) True G2173401
TU2484032 lncRNA downstream 7487 29783265 ~ 29783578 (+) True G2173422
TU2484036 lncRNA downstream 11253 29787031 ~ 29787361 (+) True G2173426
TU2484038 lncRNA downstream 12675 29788453 ~ 29788751 (+) True G2173428
TU2484067 lncRNA downstream 47044 29822822 ~ 29823038 (+) True LOC118945359
TU2484170 lncRNA downstream 51994 29827772 ~ 29828005 (+) True G2173546
LOC110509406 mRNA upstream 33618 29739777 ~ 29740669 (+) False LOC110509406
XM_021591227.2 mRNA upstream 76348 29677784 ~ 29697939 (+) True LOC110509974
XM_036967703.1 mRNA upstream 99201 29666732 ~ 29675086 (+) False LOC110509973
XR_005040524.1 mRNA downstream 46662 29822440 ~ 29825694 (+) False LOC118945359
XM_036967933.1 mRNA downstream 68442 29844220 ~ 29857693 (+) False cnih2
XM_036967931.1 mRNA downstream 68446 29844224 ~ 29857693 (+) False cnih2
XM_036967932.1 mRNA downstream 68446 29844224 ~ 29857693 (+) False cnih2
XM_036967930.1 mRNA downstream 68446 29844224 ~ 29859442 (+) True cnih2
TU2483968 other upstream 112053 29652569 ~ 29662234 (+) True LOC110509970
TU2483674 other upstream 186815 29585594 ~ 29587472 (+) False G2173114
TU2483638 other upstream 214328 29559570 ~ 29559959 (+) True G2173098
TU2482435 other upstream 1094610 28678848 ~ 28679677 (+) True LOC110509373
TU2482164 other upstream 1461136 28303205 ~ 28313151 (+) True gigyf1b
TU2484185 other downstream 93360 29869138 ~ 29871317 (+) False LOC110509988
TU2484176 other downstream 118316 29894094 ~ 29896279 (+) True G2173551
TU2484191 other downstream 176759 29952537 ~ 29953810 (+) True LOC110509998
TU2484310 other downstream 360945 30136723 ~ 30137320 (+) True G2173675
TU2484414 other downstream 543870 30319648 ~ 30323615 (+) True G2173754

Expression Profile