RNA id: XM_021591261.2


Basic Information

Item Value
RNA id XM_021591261.2
length 2874
RNA type mRNA
GC content 0.47
exon number 15
gene id LOC110510002
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30129518 ~ 30135940 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCTCTCTTGACATTTGCTCACACACAGGATGAGACCGCAGCAACTAAGACGTTGTGAGAGAGACGGGAGGAAGTAACAGGCAGATTTCACAAGCTGCAAAGAAAGGCAGAGGCAGAGGGCACCTATTGTTTGACTGAAGAAAATTAGTTTGGGACTTACAACTAGTATGGCTGCCTGGGATCTGTCTGTGACAGTGGAGGAGCTTGGCCCAGAGGCCCCACCCCTCAAAGTTAGCGTGACCTCAGACCTGCACATTGGTGGCGTCATTCTCAAAATTGTGGAGAAGACACAGATAAAGAAGGATTGGTCAGACCATGCCCTGTGGTGGGAGCAGAAGCAGCAGTGGCTGCTCCGACCATCCTGGACCCTTGAGAAGTATGAGATCCATGCCGACGCTCGCCTGAGCCTCACCCCCCAGCACAAGCCTCTAAGACTGGGGCTACCCAACGGGACCACCCTGAGGCTTCAGGCCTGCTTCTCTCGTCCAGTCTTCCAAACGGTCATGGGGGTCTGTCATCTGCTGAACCTGCGTCACCCAGAGGAGCTGTCGTTGTTACGGCCAATGGAGGtgaagaaaaagaaaaaagacaAGGAGGCAGAAGAGGAAGTAGTATACGATCTAACAGGCCTTCGGACCTCATCAGGTCCAGCTCACACCCTGTCCAATGGCATGCCTATGCACTTTGCTGACTCACTGCAGACTGAGGCTGTGTATAAGATGTTGTCTGTCAGCCTACCTGCACCTGCTCCTGAGACTATCACCAAGATGCCCCGTCCAACCAGCCTTATGGACAAGGCACAAGTTCACAGCAGATGGCTGGATTCGTCTCGTTCTCTGCTccaacagggagtgcaggagcaTGACAGGCTGCTACTACGCTTCAAATACTACTGCTTCCATGACCTGGATCCCAAGTATGATGCGGTCCGTCTGACCCAGCTGTATGAGCAGGCTCGCTGGGCCATCTTGCTGGAGGATGTTGACTGCACAGAGGAAGAGATGATGCTCTTTGCTGCCCTTCAGTACCACATTGGTAAGGTGTCTCTGTCAGAGCCCCAGCCGATGACATCATGTCCTGCCATGGATGATCTTGACTCTGCCCTTCAGTGTTTGGAGGTGAAGATGGAAGCGGAGGAGAGTATCACTGCGGACATGCTGGAAACAATGACGGTAGCACCAGAGCTGCAGGACTACTTGAAAATCTTCAGACCAAAAAGACTGACACTAAAGGGCTATAAACAGTTCTGGTTCGCattcaacaacacatccatctCCTACTACAAGAGTAAAGAGGAGAGCCTCAAGGAACCCATTCAGCAGATGAACCTCAAAGGCTGTGAGGTGGCCCCAGACGTTAGTGTGGCTGGTCAGAAGTTCTGCATCAGACTGCTGATCCCTGGCGCTGAGGGCATGAACGAAGTCTACCTACGCTGTGAGAATGAGCTGCAGTACAGCAGGTGGATGGCAGCTTGCCGTTTAGCCTCCAAAGGGAAGACACTAGCAGACAGCTCTTTCTCTAGTGAGGTGCAGAATATCCAGTCTTTCCTGGCCATGCAGCGAACCAACCCTGGGGCCAATATTGCTCAGACTGATGACAGCATCAACACATACAGCCTTGTATCCCCACGCTACCACAAAAAGTACAAAGCCAAACAGCTAACTCCACGCATCCTGGAAGCCTATCAGAATGTGGCCCAGCTCCCTCTAACAGATGCCCTCCTCAGGTTTCTTCAAATCTGGCAGGGTCTACCTGACTTTGGGGTGTCCTATTTTGTGGTGAGGTTTAAGGGATGCCGTAAAGATGAAGTCCTTGGGGTCACCAACAACCGTCTCATCCGCATTGACCTCAGCATAGGAGATGTGGTGAAGACATGGAGATACAACACCATGAGGCAGTGGAATGTCAACTGGGATATTCAACAGATGGCCATTGAGTTCAATGGCAATGTGAACATTGCCTTCAGCTGTGTGACTGCAACCTGCAAGATTGTGCACGAGTACATTGGGGGCTACATCTTCATGGCCACACGCACCAAAGAGCAGGCCGAGGTGTTGAACCAGGAGCTCTTCTTCAAGCTGACTGGTGGTCATGAAGCCATCTAAACATCCATGAATATCTGTATCTCAGAATGCACCTCTTCATGGTTTTACGTTACATGGACATGCGGTCAGTTGAACCATTTCCACAATTGTATTGTTATTACTCGACCATACAACATGTTTTTCTGACGTTATAAAAGTCAATTTAGTTTTCAAATGTTTGTGTATTTTTgtattgaaatgtattcaataggTTACATCAATAATATTAAATGAATGGCAAGCAAAAAAAATGGCTTATTATTTGctctgttgttgtggttgttaaAAATAATAAGATGTAAAAGGTGCACAGTTTTTTTTGTGGCTGACGGGGGAAACTTTTTGCCCACACTGCAGATGGCTATGTTGGTTTTGTTATTGTCATTAttcagatttttcagggggttgcagcagcaccctcagcacccctacttcccatgTCTAAGAGGCAGGCCTACATTCACAGTCAGACAAAGGCTGTTTTAGGCTTATCTCACAGGACTGAATAATTCAGCTTTAATAGTTTCAATTTTTATTAGTCGTACATTGAGCTCCAaagtatgttttgttgttgttttggctctgtactcccacactttggatttgaaatgatagaAGGACTTTGAGGTTAAAgttcagactgtcagctttaaattgagggtattttcatcaaAATCTGGTGAAACGTTTAGAAATTAAAGCACTTtttgtacttagtcccctccatTTTAGTGGgctaaaagtattgggacaaattcccTTATATGTGTATCAAAGTAGTAAAAAGTGAA

Function

GO: NA

KEGG:

id description
K17084 FERMT3, KIND3; kindlin 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484309 lncRNA upstream 737 30128488 ~ 30128781 (+) True G2173674
TU2484332 lncRNA upstream 9163 30120018 ~ 30120355 (+) True G2173685
TU2484312 lncRNA upstream 10963 30118046 ~ 30118555 (+) True G2173677
TU2484330 lncRNA upstream 13534 30115731 ~ 30115984 (+) True G2173683
TU2484266 lncRNA upstream 22015 30105248 ~ 30107503 (+) True LOC110510000
TU2484322 lncRNA downstream 82341 30218281 ~ 30222113 (+) False zmp:0000001168
TU2484323 lncRNA downstream 82341 30218281 ~ 30222113 (+) False zmp:0000001168
TU2484324 lncRNA downstream 82341 30218281 ~ 30222113 (+) False zmp:0000001168
TU2484325 lncRNA downstream 84432 30220372 ~ 30222113 (+) False zmp:0000001168
TU2484326 lncRNA downstream 84432 30220372 ~ 30222113 (+) True zmp:0000001168
XM_021591264.2 mRNA upstream 1991 30120517 ~ 30127527 (+) True LOC110510005
XM_021591260.2 mRNA upstream 22017 30050188 ~ 30107501 (+) False LOC110510000
XM_036967378.1 mRNA upstream 122057 29978474 ~ 30007461 (+) False LOC110509999
XM_021590273.2 mRNA upstream 151927 29973566 ~ 29977591 (+) True LOC110509374
XM_021591258.2 mRNA upstream 173325 29952492 ~ 29956193 (+) False LOC110509998
XM_021591263.2 mRNA downstream 3403 30139343 ~ 30147325 (+) True LOC110510004
XM_036968320.1 mRNA downstream 39564 30175504 ~ 30217982 (+) False zmp:0000001168
XM_036968322.1 mRNA downstream 39565 30175505 ~ 30215841 (+) False zmp:0000001168
XM_036968321.1 mRNA downstream 39565 30175505 ~ 30217982 (+) False zmp:0000001168
XR_005040532.1 mRNA downstream 39565 30175505 ~ 30219097 (+) False zmp:0000001168
TU2484191 other upstream 175708 29952537 ~ 29953810 (+) True LOC110509998
TU2484176 other upstream 233239 29894094 ~ 29896279 (+) True G2173551
TU2484185 other upstream 258201 29869138 ~ 29871317 (+) False LOC110509988
TU2483968 other upstream 467284 29652569 ~ 29662234 (+) True LOC110509970
TU2483674 other upstream 542046 29585594 ~ 29587472 (+) False G2173114
TU2484310 other downstream 783 30136723 ~ 30137320 (+) True G2173675
TU2484414 other downstream 183708 30319648 ~ 30323615 (+) True G2173754
TU2484421 other downstream 200912 30336852 ~ 30340691 (+) False G2173761
TU2484506 other downstream 328002 30463942 ~ 30468124 (+) True G2173841
TU2484723 other downstream 686674 30822614 ~ 30824144 (+) True LOC110510022

Expression Profile