RNA id: XM_021591264.2


Basic Information

Item Value
RNA id XM_021591264.2
length 2313
RNA type mRNA
GC content 0.49
exon number 14
gene id LOC110510005
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30120517 ~ 30127527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ATATTACTGAACTATATGGGTAAGCACTTGGGTTGCCATGTATGCAAGCCGGGGCTTAGAGTAACAGTTTGGTTATCAATCAACTTCATAAATACTGTTATATTGATAAATTATCTAATACACAGATCTATATTTAACAAACAATAGAAAACATCCTAAAGGAAACTGCCACAAAACATTTTTGATCTCAGCTCTTCGCTTTCTTTGGACATAATCTGGCAACTTAGATCCATATTGTGCAGGGGCGGTGCTTTCGTCTCACAGTAGTTTCTGGAACCTCATGGTTATACCATGGAGAAAGTGTCACAGTTGAAGGATCAGGGCAACAAGGCACTGAGTGCTGGGAAGATCGACGAGGCCATACGCTGCTACACAGAAGCGTTGGCCCTCGATCCCTCAAACCATGTCCTCTTCAGCAACCGCTCGGCTGCCCATGCCAAGAAGGGCAACTACAAGAGTGCTCTGGAGGACGCCTGTCAGACCATCAAGATTAAACCTGACTGGGGAAAGGGCTACTCAAGGAAAGCGGCAGCCCAGGAGTTCCTTGGACAGTTTGAGGATGCAAAATTGACGTACCAAGAGGGATTCAGACAGGAGCCCACTAATCAGCAGCTCAAGGAGGGGCTGCAGAACATAGAAGCCCGGTTAGCAGAAAAAAAGATGATGAACCCCTTCTCCATGCCCAACATGTTTGAAAAGCTGGAAAGCGACTCTCGAACCCATGCCCTGATGAAAGATCCAGAGTACAGAGCGCTTTTGGAGCAGCTCAGGGATAAACCGTCTATGCTTGGCTCGAAGCTCCAGGACCCTAGAGTAATGACCACCCTGTCGGTCCTGCTGGGGTTAGACTTGGCTGGCATGGATGACGAGGAAGAGCCtactcctcccccacctcccaaACCCAAAGAGACTCAGCCACCCCCTCCCAAAGAGGAAGACTTACCTGCGAACAAGAGACAAGCTCTAAAGGAGAAGGAGCTGGGCAACGAGGCGTACAAGAAAAAAGACTTTACCACTGCACTGGAACATTATGAAGAAGCCCTCAAGCATGACCCAACCAACATGACATATCTTTCTAACCAAGCAGCTGTGTTCTTTGAGAAGGCTGAGTATGAGATGTGCAGGGAGCTGTGTGACAAGGCCATCGAGGTGGGCAGAGAGAACCgggaggactacagacacattGCCAAgGCCTTGGCTAGGGTTGGCAACTCGTACTTCAAGCAGGAGAAATATAAGGAAGCAGTCCAGTTTTACAACAAGAGTCTGACAGAGCATCGCACCCCTGATGTCCTTAAGAAGTGCCAGCAGGCAGAGAAGGTATTGAAGGAGCAGGAGAAGCTGGCCTACATCAACCCAGATCAGGCCTTGGAAGAGAAGAACAAGGGCAACGAGTCCTTCCAgaaagGAGACTATCCTTCAGCCATGAGACATTACTCTGAGGCCATCAAGAGGAACCCCAATGACGCCAAGCTCTTCAGCAACAGAGCTGCCTGCTACACGAAGCTGCTGGAGTTCCAGCTTGCCCTAAAGGATTGCGAGGACTGTATCAAACTTGATCCTACCTTCATAAAAGGGTACACGCGCAAGGCAGCTGCTTTGGAGGCCATGAAAGATTTCTCTAAAGCGATGGTTGCCTACGAGAAGGCTCTGGAGCTGGACTCTACTTCCAAGGAGGCCACAGAGGGCATCCAGCGCTGCATGATGAGCCAACACGTGAGGAATGACGACAGTCCAGAGGACGTGAAGAGGAGGGCCATGGCTGACCCGGAGGTGCAGCAGATCATGAGTGACCCAGCCATGCGCATGATCCTAGAGCAGATGCAGAAGGACCCACAGGCACTCAGCGATCACCTTAAGAATCCAGGCATTGCTCAGAAGATCCAGAAACTGATAGATGTGGGACTGATAGCCATCCGGTGATGAGTGAGGAGAACAGGGCCAGAACCCATGAAGAACCAACCGCAAGACCACAGAGGATCAAGATGCCATTCCCTTAagatataaccccccccccccctctcccttatacCCTCAAAATGATACTGTATGCCATCTCGTCCAAACTTCAACCAACAGAGGGTTTCATTTTCTTTATCCATTTTTACAGCCTTAATGAAATTGTACTTAGTGTCTTCCTCATCACAGAACTCTCTGAAACAAATCATTTGATTGGGCAAACTTATCAAACACCTATTACTGGAGCAGCAGACCAGGCTAGAGCTTTGGTTGGCACAATGACTGACTGCATTCATATCAGTGCTGCAGCTTATAACAAAACAAGTAAAGTTCTATTTGGGTGTTGAACCATGA

Function

GO: NA

KEGG:

id description
K09553 STIP1; stress-induced-phosphoprotein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484332 lncRNA upstream 162 30120018 ~ 30120355 (+) True G2173685
TU2484312 lncRNA upstream 1962 30118046 ~ 30118555 (+) True G2173677
TU2484330 lncRNA upstream 4533 30115731 ~ 30115984 (+) True G2173683
TU2484266 lncRNA upstream 13014 30105248 ~ 30107503 (+) True LOC110510000
TU2484299 lncRNA upstream 28479 30091833 ~ 30092038 (+) True G2173664
TU2484309 lncRNA downstream 961 30128488 ~ 30128781 (+) True G2173674
TU2484322 lncRNA downstream 90754 30218281 ~ 30222113 (+) False zmp:0000001168
TU2484323 lncRNA downstream 90754 30218281 ~ 30222113 (+) False zmp:0000001168
TU2484324 lncRNA downstream 90754 30218281 ~ 30222113 (+) False zmp:0000001168
TU2484325 lncRNA downstream 92845 30220372 ~ 30222113 (+) False zmp:0000001168
XM_021591260.2 mRNA upstream 13016 30050188 ~ 30107501 (+) False LOC110510000
XM_036967378.1 mRNA upstream 113056 29978474 ~ 30007461 (+) False LOC110509999
XM_021590273.2 mRNA upstream 142926 29973566 ~ 29977591 (+) True LOC110509374
XM_021591258.2 mRNA upstream 164324 29952492 ~ 29956193 (+) False LOC110509998
XM_021591256.2 mRNA upstream 179532 29940307 ~ 29940985 (+) True LOC110509996
XM_021591261.2 mRNA downstream 1991 30129518 ~ 30135940 (+) True LOC110510002
XM_021591263.2 mRNA downstream 11816 30139343 ~ 30147325 (+) True LOC110510004
XM_036968320.1 mRNA downstream 47977 30175504 ~ 30217982 (+) False zmp:0000001168
XM_036968322.1 mRNA downstream 47978 30175505 ~ 30215841 (+) False zmp:0000001168
XM_036968321.1 mRNA downstream 47978 30175505 ~ 30217982 (+) False zmp:0000001168
TU2484191 other upstream 166707 29952537 ~ 29953810 (+) True LOC110509998
TU2484176 other upstream 224238 29894094 ~ 29896279 (+) True G2173551
TU2484185 other upstream 249200 29869138 ~ 29871317 (+) False LOC110509988
TU2483968 other upstream 458283 29652569 ~ 29662234 (+) True LOC110509970
TU2483674 other upstream 533045 29585594 ~ 29587472 (+) False G2173114
TU2484310 other downstream 9196 30136723 ~ 30137320 (+) True G2173675
TU2484414 other downstream 192121 30319648 ~ 30323615 (+) True G2173754
TU2484421 other downstream 209325 30336852 ~ 30340691 (+) False G2173761
TU2484506 other downstream 336415 30463942 ~ 30468124 (+) True G2173841
TU2484723 other downstream 695087 30822614 ~ 30824144 (+) True LOC110510022

Expression Profile