RNA id: TU2484324


Basic Information

Item Value
RNA id TU2484324
length 3533
lncRNA type sense_over
GC content 0.42
exon number 2
gene id zmp:0000001168
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30175504 ~ 30222113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

acacacacatgcataataCTCTGCATTCTGTAGAATGATATTTGAACTCTGGACCAGCCCATGAGTGTCAAACCAACTGAAAAACAACCCTGAGTCATTTCTCACCATCTGGTCTTCTCAATAGCTTGACCAGTTAAGAGGCATATCCAGGGTTGCTCTTTACCCAATAGTGTGTTTCTTTGTACCGTgagtgtgcgcgtgcgtgcatcACCATGGTTATTTTATCTTGCTTCACATACTTGACAAGTTGGGCAGAATAGCAATTGCGTAAAGCTACACAAATGATTTAGATGAAGAGACATGTGCAGCATGTTTGATGGCTGTTTATTTCAATTGACCCaaagtgtgtgtacagtatgtaaacagtagtctctctcctctctgctcaaCCCTCTCCATGATATGCAACGTCTCGGACTGAGAACAAACAGCTCAGCTGTGCACCATTAGAGGGGATGGCCTTGGAGCTACATAGGGAAAATGACATGCATGCAGGCAGCCTGCTTGAAAAGACGGACTGATGCATACTgaccctgcctctctctgccaaCCTGCTCACAGAATGGTTAGTTCATTGTGTAGAGACACtattctctcccctccctaccgCCTCAGCTTCATTTGAAGGGTTATGGACTTGAGTCGGCAAGTAACAGAGTATTTCACATCTGCTTTCAGGGAATGAGATGCAATTTAGTTATAAGGGAATTGACTCACCGAATGCACTCAGAGAGCTGGTGGTGTTCCGTGCAAGTACTTGAGATGGATATGGAAGTGGATAATGCCTTGGATGAGGATGAAACAATGGAACTTTATCCCTTAAAGAATGGCTGTAGAAGCTACACTGTAGAAAGTACGCCTCCTGCTGGACTGAGCCATGCATTGCCACACGGCAGCTCTCCTTtcaaagaaaaaaaaattgtagagaTTTAATGTAAACTGAACAGGATTCCTTTAGTGAACACAGCCATCTGTGTTCAATTatattttgtgtttgtttgtttgctggcTACAATGATAATTCAGTGTATTTGAAATTTATTCGGAAAGGTTCTAGAGTGGTTGACTGTGGGTGAGGGATTCCCTCATTTCAtctttctgtgtgtgtacctactgtatgtgtttctgCGTTGTTTTTGCACTTTTAGCATAACCTATATGGGCATGGGCCAGGGCACTATTTAACCTCCTGCCCAGGTTTATGCCTTGCTTGAAAAATGAACGTGGATTTGATCTCACCCCACCTCATCTTCAGGTCCACTGCTGATGACGCCAATAACAATATGAGATCAGAGGAGGACGGGATTATTCCTCCTCCAAGACTATTCTGCCAAAAGACGCCAGGGCAGATCTCCTACACCCCACTCAGACCACTGGACCCAGCTGTGACACGCCCAAAATAACTAGACTTAAAATTTGGAAGGGATGCCAAACAATCGTCAATCACACTGTCTCAATGCTACTTTTTAAAGACCTACCCTTTTACTTCCTCTTGTGATTTTATTTTAGAGTCACTGTGATTGCCCGGTACCAGCAGATTACCATATATTCTAATGAAATAAAACATCTAAACTTTATCTATATGTGAAGATGACATGTACAGCTGAAGTGTTCAATGTTACTTAGCGCATTCGGTTGTGTATGCTGTCCATTGCAGGATGGTTTAACATGCAGACCAGTGTAAATGTGGCCGAACAGGCTGTTTGATCCATGCTGTTTGAAATGTTGGAAATGCCTTGTTGGAAATGATTAGTAGAGTTGAGAAGTGGAAGAATATCTGATGTTTTACTGTGTTCTTCTGTATAGTTCTTTAGATTCTAGGAGGTTGTTGAGGCATGATACTGCACCAGGCAACTTCCTAGCTcccctctgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtatgtatgtatgtatgtatgtatgtataaaaatgtaataACTTATTAATCTTGCAAATGTGGAATCCTTGTTGGCTGTTTTAATACAAGGGGGGGGGGAGCAATTACATGTGCTAAAAAGTTAAACTGGTATGGTGGGGGTTGGTTTTCAGGAATAATCTTTTTTTTGGTAGAAATTCAAACATAAGAAGACAGCAGGAAAATATATTTCTGCAATGTTCTAGTATTGGTTATCATTATCATATTACTATTGAGCTATTCATTCAGAGCTCCTACGTTCACATTCAATAAGGTCTCTAAAGCCACTAGGTGCGTGTTAAAGAGTGACTCTCAGACTGTCCACAGAGGACCGGACAGACAACATGGTCAGACTGGTTCATGTGAAGGCTTCTCTCTCAGACATTCTGCCTACCTGAAAGTGTAATGAACGGTAACTCAGCTTGGTGTCTTCATTTCAGTTCTTTATGGTAGCAGACAGTGACAGGTTGTCCTGTACCCTCCagaatagacaggtgtgtctgcCACATGACAGACGCAGATGTACGGTTGGTTGGTATGGGGTCTCTCCAGGGTCCGCTCTGCAGCCCTAATTAAATCTAAAAGAAGACCTACAATAAGATGGGTTTAGGGACCCCAGGAAATTGTCAAATGGGTTATATGAAGATGATATGAAGTTTGTGTTTTGTTAGGTTAATGGGAATTATTCTGTATAGCACTGGTTAAAGACCAGTATCTCCAACCCTATCAAAATATAATCATTTGATGCAGAAAAACGCAACTTTCCACAATCATTTGGACAAGTATAAACCATCCTCCAAATCACACTCTTGAGTGCACTTTGAAGACCCATTTATGCATCACAGAACATATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAACGTATGTCTGACACCTAACACAGAAAGTATGTCTGACACCTAACAACACATTACAGATAGGAACAATTCAATAGGCTCTCACCTGCTGTAGGCTACTTCAGCTGGCAAATGATCTCCAACAAGCCAATAGGAAACCTGTGAGAAAGATCCCTGCTAGAGACATGTGGctgttccctcctcccctccatgcTGTAAGAGCACAGATAAATGAACAGTGTTTTCCTCTTATTGGTTTGCCTTTTATGTCATGGCACCATCCTTACAGGAAACCATGGCATCAGTATATGCCCTACTTACCACACAGAGCTGGAATGTCAAGATAGAATACAGGACATGATTACCAGTAGAACTACACATGAAGTCATATCCTGGTGTAGGTTTACGGCAGGCCTGGGCCACACATCAGGTCAGAACGGTAGCACACATTATGCACTCAGCTCAGCCAGTTAAAGAGCTGACGTTACCATAACCAGGCAGTGGCACACTGAGGGAATGTATTGTAAaacacaaaaacatgttttcggtATGATGCCACCTCTAAACCTGTTCTTTCCCTCACAGGAAGTCAACTGACTAAATGTTGTTCATGTACTGTGAACTGGAGGACATGGCAATAAAGAATCCTTTAGAAGTGAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484309 lncRNA upstream 89500 30128488 ~ 30128781 (+) True G2173674
TU2484332 lncRNA upstream 97926 30120018 ~ 30120355 (+) True G2173685
TU2484312 lncRNA upstream 99726 30118046 ~ 30118555 (+) True G2173677
TU2484330 lncRNA upstream 102297 30115731 ~ 30115984 (+) True G2173683
TU2484266 lncRNA upstream 110778 30105248 ~ 30107503 (+) True LOC110510000
TU2484384 lncRNA downstream 56505 30278618 ~ 30279075 (+) False G2173737
TU2484385 lncRNA downstream 56505 30278618 ~ 30279652 (+) True G2173737
TU2484387 lncRNA downstream 59893 30282006 ~ 30284686 (+) False G2173738
TU2484386 lncRNA downstream 61617 30283730 ~ 30284686 (+) True G2173738
TU2484401 lncRNA downstream 77500 30299613 ~ 30309735 (+) False G2173744
XM_036968320.1 mRNA upstream 299 30175504 ~ 30217982 (+) False zmp:0000001168
XM_036968321.1 mRNA upstream 299 30175505 ~ 30217982 (+) False zmp:0000001168
XM_036968322.1 mRNA upstream 2440 30175505 ~ 30215841 (+) False zmp:0000001168
XM_021591263.2 mRNA upstream 70956 30139343 ~ 30147325 (+) True LOC110510004
XM_021591261.2 mRNA upstream 82341 30129518 ~ 30135940 (+) True LOC110510002
XR_005040397.1 mRNA downstream 42877 30264990 ~ 30291203 (+) False LOC110510009
XM_036967571.1 mRNA downstream 42879 30264992 ~ 30291203 (+) False LOC110510009
XM_036967573.1 mRNA downstream 44674 30266787 ~ 30291202 (+) False LOC110510009
XM_036967572.1 mRNA downstream 44675 30266788 ~ 30291202 (+) True LOC110510009
XM_021591288.2 mRNA downstream 430579 30652692 ~ 30669474 (+) False LOC110510020
TU2484310 other upstream 80961 30136723 ~ 30137320 (+) True G2173675
TU2484191 other upstream 264471 29952537 ~ 29953810 (+) True LOC110509998
TU2484176 other upstream 322002 29894094 ~ 29896279 (+) True G2173551
TU2484185 other upstream 346964 29869138 ~ 29871317 (+) False LOC110509988
TU2483968 other upstream 556047 29652569 ~ 29662234 (+) True LOC110509970
TU2484414 other downstream 97535 30319648 ~ 30323615 (+) True G2173754
TU2484421 other downstream 114739 30336852 ~ 30340691 (+) False G2173761
TU2484506 other downstream 241829 30463942 ~ 30468124 (+) True G2173841
TU2484723 other downstream 600501 30822614 ~ 30824144 (+) True LOC110510022
TU2485681 other downstream 1095724 31317837 ~ 31318377 (+) True G2174785