RNA id: TU2484387


Basic Information

Item Value
RNA id TU2484387
length 750
lncRNA type intronic
GC content 0.36
exon number 4
gene id G2173738
representative False

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30282006 ~ 30284686 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtttactggttttaggtggtagttgaactgtttactggttttaggtggtagttgaactgtgtatttctctgattgagctgtttactggttttaggtggtagttgaacggtgtatttctctgattgaaatgtttactggttttaggtggtagttgaactgtttactggttttaggtggtagttgaactgtgtatttctctgattgagctatttactggttttaggtggtagttgaacggtgtatttctctgattgaaatgtttactggttttaagtggtagttgaactgtttactggttttaggtggtagttgaactgtttaCTGGTTCTAGGTGGTAGTTGaattgtttactggttttaggtggtagttgaactgtgtatttctctgattgagctgtttactggttttaggtggtagttgaactgtttactggttttaggtggtagttgaactgtgtatttctctgattgaactgtttactggttttaggtggtagttgaactgtttactggttttaggtggtagttgaactgtttactggttttaggtggtagttgaactgtttaTTGGTTTAAGGTTGTAGTTGAACTGTGTATTTCTCTgaactgtttactggttttaggtggtagttgaactgtgtatttctctgattgaactgtttactggttttaggtggtagttgaactgtgtatttctctgattgaactgtttactggttttaagtggtagttgaactgtttactggtttta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484385 lncRNA upstream 2354 30278618 ~ 30279652 (+) True G2173737
TU2484384 lncRNA upstream 2931 30278618 ~ 30279075 (+) False G2173737
TU2484322 lncRNA upstream 59893 30218281 ~ 30222113 (+) False zmp:0000001168
TU2484401 lncRNA downstream 14927 30299613 ~ 30309735 (+) False G2173744
TU2484394 lncRNA downstream 15013 30299699 ~ 30303010 (+) False G2173744
TU2484397 lncRNA downstream 15013 30299699 ~ 30303010 (+) False G2173744
TU2484399 lncRNA downstream 15013 30299699 ~ 30303010 (+) True G2173744
TU2484407 lncRNA downstream 19527 30304213 ~ 30307007 (+) True G2173747
XM_036968316.1 mRNA upstream 59894 30175505 ~ 30222112 (+) False zmp:0000001168
XM_021591288.2 mRNA downstream 368006 30652692 ~ 30669474 (+) False LOC110510020
XM_021591289.2 mRNA downstream 368008 30652694 ~ 30669474 (+) True LOC110510020
XR_005040536.1 mRNA downstream 407275 30691961 ~ 30778743 (+) False LOC110509412
XM_036968345.1 mRNA downstream 407276 30691962 ~ 30780818 (+) False LOC110509412
XM_036968346.1 mRNA downstream 407276 30691962 ~ 30780818 (+) False LOC110509412
TU2484310 other upstream 144686 30136723 ~ 30137320 (+) True G2173675
TU2484191 other upstream 328196 29952537 ~ 29953810 (+) True LOC110509998
TU2484176 other upstream 385727 29894094 ~ 29896279 (+) True G2173551
TU2484185 other upstream 410689 29869138 ~ 29871317 (+) False LOC110509988
TU2483968 other upstream 619772 29652569 ~ 29662234 (+) True LOC110509970
TU2484414 other downstream 34962 30319648 ~ 30323615 (+) True G2173754
TU2484421 other downstream 52166 30336852 ~ 30340691 (+) False G2173761
TU2484506 other downstream 179256 30463942 ~ 30468124 (+) True G2173841
TU2484723 other downstream 537928 30822614 ~ 30824144 (+) True LOC110510022
TU2485681 other downstream 1033151 31317837 ~ 31318377 (+) True G2174785

Expression Profile