RNA id: XM_021591289.2


Basic Information

Item Value
RNA id XM_021591289.2
length 3722
RNA type mRNA
GC content 0.52
exon number 20
gene id LOC110510020
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30652692 ~ 30669474 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTCAGATAAGTTATCGCGAGATTTCCGTATGCGTTATTAATCTTTTGGGGTGTTCTTCCTTATTTGTGAATACACAAGCTACATTTGGCCTGGCTGCAgccctttttttgttgttgttgttgaggaagACGCTAATGGGCAGGCGTTTTATCGTTAGACATTTAGTTCGGAGTATGTATTTATGAATTGATTCAAGAAACTTGGTAGTTACCTAGGTAAAAACTAGCGCTAAGTAACTTCGTTAACTAGCTGGTTACGTTAGCAGCCAGTTAGGAGTAGCTAGTACACACAGGTGAGTGGCCTCTCAAATGCATTAGCAACTTAGTAGCTAGCAACATCTGGGTGTATCCTAGCGAAGTAAGTGAGTTTTCAGTCTATGACCTTTTTATTTGCTGCACAAATTGGATGTCTTCTTCACTTCGAACCGAACACATAAATATTGCAGCGATTTCCCTTAGTTTAGATGCATGCAGGGCCTCTACGATATCTAGTtctcgttagctagctaaatggcGTCAGATAGTGACACAGAGGAATTCTACGATGCTGCTGAAGACGTAAATTTTACTCCACCGCCTAATTTGACACCGACACAGTTTGTTCTTCCCACACCTCCGGGGGTGGTAGAGAGGCCACCAGAGGACGTGGCTGTTGGGCTGGCCACACTTGAGGCACGCCAAGATGACCCCATCCAGATCATCGACAGCATCATTGAGGAGAGCCAGAAGGGAATTGTGGTGGAGGAGGCTCTGttgatgggagagagggatgttgAGACGAGGGCGGAGTCAGTGGTGAAGAAGGAGTATAAGGCCCCTATAGAACCAGAGCATCCCGCTGTGGAACCTCAGCCTGTGGTTGAGAGATCAGAACAGCCTCAGGAACAGCAGGGAGCGTGTGCCATGGTTCTCCTAGACATCCCCGGCCCGTCAGTTGGGTCACAGGAGCATGTCCAGCCCCCAGACATCACCAGCACCCTGGGTCAGGGCCAGAGTCAACCAGACCTCCCGCCGGACCTCCCTGACCTACCCCGGGTGTCTGCAGAAGACAGGGAGCAGAGACCTGCAGACATCCTAGACCAGGTCCCCCTCACAGACAAGAAGCTATGTGACTCCACCGACCCTGGGCCTTCTAAACCCCCACGGCAGTTCACTGTAGAGCCTGACATTGTGGCCAGCACCAAGAAGCCTCTGCCCTCACGCCCCCCTCCTCCCAGCGGAGCTCCTCCTCCACGACCACCTCCCCCATCCCGACCTGCTCTACCCCTCAGCAAGAAGTCCCAGGAGTGTATGAGGCCCACAGGACTGGATGTGGAGCCAGAGGAGCCGTGTGGCCTGGTGTCTCCCAGCAGCACAGTGAGAGGCATCACCAAGGATCTGCAGCACTCTCTGGACTTGGCCAGTGCCACCAGCGGGGACAAGGTGGTCACAGCACAGGAGAATGAGGATGAGCAGGCATCCGGTCCCATTAATGACTCTCTAGGTCCTCAGCGCCCACGCTCCAACTCTGGCAGAGAGCTGACTGATGAGGAGATCCTGGCGAGTGTGATGATCAAGAATCTGGACACTGGGGAGGAGATCCCTCTGATCCAGGCAGAGGAGAAGCTTCCTACAGGGATCAACCCACTCACATTACACATCATGAGGAGGACCAAAGAGTACATCACGAATGACGCAGCACAGTCCGATGATGATGACCGAGGCCAGGTTCCGCTGACTGACACAGACGGAGGGAAGCTGAAACAGAAAACCACTCGGCTGAAGAAGTTCCTGGGCAAGTCTGTGAAGAGGGCCAAGCATCTGGCTGAGGAGTATGGGGAGAAGGCCGTCAACAAGGTGAAGAGTGTCCGTGATGAAGTTTTCCATAACGACCAGGATGACCCGTCGTCCAGTGACGATGAGGGGATGCCCTACACCCGGCCTGTCAAGTTCAAGGCGGCCCACAGCTTCAAGGGTCCCTTCGACTTTGATCAGGTTAAGGTGGTCCAGGACCTGAGCGGGGAGCACATGGGTGCAGTGTGGACCATGAAGTTCTCTCACTGCGGGAGGCTGTTGGCGACAGCAGGCCAGGACAACGTGGTGCGGATATGGGTTCTGAAAAATTCCTTTGACTACTTCAATAACATGAGGGCAAAGTACAACACTGAAGGTcgtgtgtctccctctccctctcaggaAAGCCTGTGTTCCTCCAAATCAGACACGGACGGTGGGATGAGCAGTGTTCCTGAAGACCCTGAGGACAAGAATCTCCCCTTCCGCCAAGTCCCGTTCTGCAAGTACAAGGGTCATACAGCTGACCTGCTTGACCTGTCCTGGTCAAAGAACTACTTCCTGCTTTCCTCGTCGATGGATAAGACCGTCCGACTGTGGCACATATCCAGGAGAGAGTGTCTATGTTGCTTTCAGCATATTGACTTTGTCACAGCCATCGCTTTCCATCCCAGAGATGACAGGTACTTTCTGAGTGGCTCTCTGGATGGGAAACTGCGTCTGTGGAACATCCCAGACAAGAAGGTGGCTCTGTGGAATGAGGTGGATGGACAAACACGCCTCATCACTGCTGCCAACTTCTGCCAGAACGGGAAGTACGCCGTCATTGGCACCTACGATGGCCGCTGCATCTTCTATGACACAGAGCGCCTTAAATACCACACCCAGATCCATGTACGGTCAACCAGAGGCAGGAACCGAGTGGGACGGAAAATCACAGGCATCGAGCCTCTTCCTGGAGAGAACAAGATTCTGGTAACCTCCAATGACTGCAGGATCCGCCTGTATGACCTGCGGGACCTGTCTCTGTCCATGAAGTACAAGGGTTATGTCAACAGCAGTAGTCAGATCAAAGCCAGCTTCAGCCATGACTATTCGTTCATTGTGAGTGGCTCAGAAGACAAGTATGTGTACATCTGGAGCACCTACCATGATCTGAGCAAGTTTACCTCCGTACGACGAGACCGCAATGACTTCTGGGAGGGAATTAAAGCCCACAATGCAGTAGTGACGTCGGCCATTTTCGCCCCCCATCCTAACCTGATCGTCCCCCAGGAGGCGGGGGCAGAGAAAGCAGGGGCTGGGGCCGATGCAGAGTGTAAGAGCGTGGACTCCACTGATTCCGAGACCATTCCCTCAGGGGCTCTGAAGGCCGATCATACAGAGGTTCTGCTCTCTGCTGACTTCACCGGCGCCATTAAAGTTTtcatcaatgtaaaaaaaatactgagCACTTCTGCCTTAAAGGCTTCACCCTGAACATATACTGAACTCTTGTCAGTGTGCAGTCCTACCATGGAGGCAGAGCAACCCGCTGCCCTGCCAATGCTTCTAAAACTGGACAATTTCCTACTGGTGAGTGCTCCGGGAGGGAGGAGTTACCCTCCGGAGAACAGGGACCCTAAAGTAGAGGATGATGATGGGAAGGTGGCTCCCAGATGTCCTGTCACAAAGCACAAGTACGCTGTGTTTAAAGTAAAGCAGGTTTGTGAGACTGGATCAGATCGTATAGTAGGACCAGAATTTGGTTCAACAAGTGCAGTGTGGATGGTTATGTAAGTTTTTTTTGTCAGTTTTAATGGGCACTGTCTTACTCTAAACTTCACTGCTTTTCTAGTACCCTCTCCTCCTTGCCAGGAATGTCAGTCTTAAAATTAAAACCAACTCTAATCATTTCGGGTACATCTGTGTCTTGTGTTATGAAAAATAAAATGGAACCACTTAAGGATA

Function

GO: NA

KEGG:

id description
K20241 WDR44, RAB11BP; WD repeat-containing protein 44

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484595 lncRNA upstream 61515 30575414 ~ 30591179 (+) True G2173913
TU2484564 lncRNA upstream 114303 30537261 ~ 30538391 (+) True G2173886
TU2484550 lncRNA upstream 123073 30527210 ~ 30529621 (+) True G2173882
TU2484553 lncRNA upstream 123208 30527141 ~ 30529486 (+) False G2173882
TU2484692 lncRNA downstream 72949 30742423 ~ 30742624 (+) True G2174000
TU2484752 lncRNA downstream 176380 30845854 ~ 30847706 (+) True G2174036
TU2484760 lncRNA downstream 204332 30873806 ~ 30874737 (+) True G2174044
TU2484763 lncRNA downstream 207111 30876585 ~ 30876847 (+) True G2174047
TU2484765 lncRNA downstream 208784 30878258 ~ 30878523 (+) True G2174049
XR_005040397.1 mRNA upstream 361491 30264990 ~ 30291203 (+) False LOC110510009
XM_036967571.1 mRNA upstream 361491 30264992 ~ 30291203 (+) False LOC110510009
XM_036967573.1 mRNA upstream 361492 30266787 ~ 30291202 (+) False LOC110510009
XM_036967572.1 mRNA upstream 361492 30266788 ~ 30291202 (+) True LOC110510009
XM_036968323.1 mRNA upstream 430582 30175505 ~ 30222112 (+) False zmp:0000001168
XR_005040536.1 mRNA downstream 22487 30691961 ~ 30778743 (+) False LOC110509412
XM_036968345.1 mRNA downstream 22488 30691962 ~ 30780818 (+) False LOC110509412
XM_036968346.1 mRNA downstream 22488 30691962 ~ 30780818 (+) False LOC110509412
XM_036968347.1 mRNA downstream 22488 30691962 ~ 30780818 (+) False LOC110509412
XM_036968348.1 mRNA downstream 22488 30691962 ~ 30780818 (+) False LOC110509412
TU2484506 other upstream 184570 30463942 ~ 30468124 (+) True G2173841
TU2484421 other upstream 312003 30336852 ~ 30340691 (+) False G2173761
TU2484414 other upstream 329079 30319648 ~ 30323615 (+) True G2173754
TU2484310 other upstream 515374 30136723 ~ 30137320 (+) True G2173675
TU2484191 other upstream 698884 29952537 ~ 29953810 (+) True LOC110509998
TU2484723 other downstream 153140 30822614 ~ 30824144 (+) True LOC110510022
TU2485681 other downstream 648363 31317837 ~ 31318377 (+) True G2174785
TU2486199 other downstream 941070 31610544 ~ 31611469 (+) True G2175233
TU2486351 other downstream 1231507 31900981 ~ 31901236 (+) True LOC110509422
TU2486438 other downstream 1367573 32037047 ~ 32037736 (+) True G2175413

Expression Profile