RNA id: TU2484752


Basic Information

Item Value
RNA id TU2484752
length 1783
lncRNA type antisense_over
GC content 0.39
exon number 2
gene id G2174036
representative True

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30845854 ~ 30847706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATCAGTACTGTTTATTTTACACTACAAATGTcaggaggagttagaaaaccagGCATGTTTTGGGATTCACCCATTTGAAGTTCTCAGTGTTCAGAAACTGCAATTATTAAACAGCAATACATAAAATATATATCTTCCTGTGGGAGAATAGATAGCAAGATAAATGATACCATAAATACATTAACAATATTATTTGTCgtcatcacaaaaaaatacacaaaagaaaaaaagaaatataTGGGTCGTTCCACTAAAAGAGTGCCTTTTGCATCCATTTGCTATTTTAAGTAAACTTTgtgcaccgatattacattttaaaatacTTTTATATTAaattaatatagaccacatggagaattctaTAAATCACATTTTTcgatatgaataaagacttgctaaagaGCCCAAATTGTgtattttgacatgtccctccatgTACCTCTGTGACTTGTAATATTTTACCCCACTTAACCTTACAATGCTgtattttgacatgtccctccatgTACCTCTGTGACTTGTAATATTTTACCCCACTTAACCCTACAATTCTGTACGTTTTCACcgtcattgtaaagccctagttatgaAGTTGCTTTGACAAAATCATTGatttaatgtgattagtgaaTCATTTACCCCTacccctcattttaaggtcatcCCTGTTACATTATCTtaactctcgttttaatatggtgaaactatgccttagtttttttttttttaagaaacatTTCATAGTCAAATcctagtgtaaaagcaggtgagctggctcTACTCCTATTGGACATGTTCTGGTGTCTGTCGTGGAAAGTGAGGGGGTCGAGCACaacatggtcaaccctgttacccatataTAGACATACTATAAATGTTAAAACAATGAAACATTTttggtgaagcttgcattcaattgccactccctgttgcaAACAACAAGCTTCTATTCCCCAAGTCAAAACAggattcatggctgatttaagattaaATTGTCAACTCTGTTACTTTATTCGGCATGTAATAGGCACTTTCTATTGTCTTTTCTATTTATTTTGAGATGGGAAAacttttattaagttgaacatttgctctttatgacagaatgttaaaatgtgAAATCAAAAGTAATTTTTTtcaaaaggcaccgaattggtggGATGGCCCATATACTGTAACAATCACTTATATAAACACCTCAGCCCAGAAGGTAGAGCTCAGAGAATCTACTTCCTTGTTGCTCTACGAATGGAGATTCATGGGATGCGCCGTCTGTCCAAAACCATTTCTGTGATTTAACATCATGGCTGTCTTTCTGACCGTGGTGAGGGTCTCTGGCACCCCACTGGGGACAGGCAGACATTCTCTCCACACAGCTGCTCCTCCCACTTCATCTCTCCTGCTGATCAGTCAGAGCCAGGAGGCCTCACACACTGTCTATAAATAacagagatgtactgtatgtaggtgTCGAAGCTTGTCTACGTGGGCAGAGGAAGgatgtgtttatgtgggtgtgtTGTCGCACAAGAGAGTGAATGTcaatatttgtttgtgtgtgacagaaagaacaagagagagatatagagagtaggagagagaggactcaGTACATAGCATCCTCGTACATGTCCGTCCGGAGGCAGAAGAGGATGCCTCCCCCTAGCATGAAGATGGTGCCCCCCCAGCCCAGTCCGTAGCCCCAGTTGAACTCATGGTAGGTCTGGAGGACAGTTCCATCAATGAACTTGATTGGGTAGAGGACCAGTGCACAGGCCTGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2484692 lncRNA upstream 103230 30742423 ~ 30742624 (+) True G2174000
TU2484595 lncRNA upstream 254675 30575414 ~ 30591179 (+) True G2173913
TU2484564 lncRNA upstream 307463 30537261 ~ 30538391 (+) True G2173886
TU2484550 lncRNA upstream 316233 30527210 ~ 30529621 (+) True G2173882
TU2484553 lncRNA upstream 316368 30527141 ~ 30529486 (+) False G2173882
TU2484760 lncRNA downstream 26100 30873806 ~ 30874737 (+) True G2174044
TU2484763 lncRNA downstream 28879 30876585 ~ 30876847 (+) True G2174047
TU2484765 lncRNA downstream 30552 30878258 ~ 30878523 (+) True G2174049
TU2484766 lncRNA downstream 32404 30880110 ~ 30880807 (+) True G2174050
TU2484770 lncRNA downstream 66058 30913764 ~ 30913996 (+) True G2174054
XM_036968236.1 mRNA upstream 23001 30817845 ~ 30822853 (+) False LOC110510022
XM_021590223.2 mRNA upstream 41035 30786744 ~ 30804819 (+) False il13ra2b
NM_001246355.1 mRNA upstream 41089 30787043 ~ 30804765 (+) True il13ra2b
XM_036968345.1 mRNA upstream 65036 30691962 ~ 30780818 (+) False LOC110509412
XM_036968346.1 mRNA upstream 65036 30691962 ~ 30780818 (+) False LOC110509412
XM_036967375.1 mRNA downstream 73782 30921488 ~ 31015368 (+) False LOC110510024
XM_036967376.1 mRNA downstream 73782 30921488 ~ 31015368 (+) False LOC110510024
XM_036967372.1 mRNA downstream 73782 30921488 ~ 31017638 (+) False LOC110510024
XM_036967374.1 mRNA downstream 73782 30921488 ~ 31017638 (+) False LOC110510024
XM_036967373.1 mRNA downstream 74141 30921847 ~ 31017638 (+) True LOC110510024
TU2484723 other upstream 21710 30822614 ~ 30824144 (+) True LOC110510022
TU2484506 other upstream 377730 30463942 ~ 30468124 (+) True G2173841
TU2484421 other upstream 505163 30336852 ~ 30340691 (+) False G2173761
TU2484414 other upstream 522239 30319648 ~ 30323615 (+) True G2173754
TU2484310 other upstream 708534 30136723 ~ 30137320 (+) True G2173675
TU2485681 other downstream 470131 31317837 ~ 31318377 (+) True G2174785
TU2486199 other downstream 762838 31610544 ~ 31611469 (+) True G2175233
TU2486351 other downstream 1053275 31900981 ~ 31901236 (+) True LOC110509422
TU2486438 other downstream 1189341 32037047 ~ 32037736 (+) True G2175413
TU2486784 other downstream 1274064 32121770 ~ 32126078 (+) True LOC110509425

Expression Profile