G2174036


Basic Information

Item Value
gene id G2174036
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 30845854 ~ 30847706 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2484752
TATCAGTACTGTTTATTTTACACTACAAATGTcaggaggagttagaaaaccagGCATGTTTTGGGATTCACCCATTTGAAGTTCTCAGTGTTCAGAAACTGCAATTATTAAACAGCAATACATAAAATATATATCTTCCTGTGGGAGAATAGATAGCAAGATAAATGATACCATAAATACATTAACAATATTATTTGTCgtcatcacaaaaaaatacacaaaagaaaaaaagaaatataTGGGTCGTTCCACTAAAAGAGTGCCTTTTGCATCCATTTGCTATTTTAAGTAAACTTTgtgcaccgatattacattttaaaatacTTTTATATTAaattaatatagaccacatggagaattctaTAAATCACATTTTTcgatatgaataaagacttgctaaagaGCCCAAATTGTgtattttgacatgtccctccatgTACCTCTGTGACTTGTAATATTTTACCCCACTTAACCTTACAATGCTgtattttgacatgtccctccatgTACCTCTGTGACTTGTAATATTTTACCCCACTTAACCCTACAATTCTGTACGTTTTCACcgtcattgtaaagccctagttatgaAGTTGCTTTGACAAAATCATTGatttaatgtgattagtgaaTCATTTACCCCTacccctcattttaaggtcatcCCTGTTACATTATCTtaactctcgttttaatatggtgaaactatgccttagtttttttttttttaagaaacatTTCATAGTCAAATcctagtgtaaaagcaggtgagctggctcTACTCCTATTGGACATGTTCTGGTGTCTGTCGTGGAAAGTGAGGGGGTCGAGCACaacatggtcaaccctgttacccatataTAGACATACTATAAATGTTAAAACAATGAAACATTTttggtgaagcttgcattcaattgccactccctgttgcaAACAACAAGCTTCTATTCCCCAAGTCAAAACAggattcatggctgatttaagattaaATTGTCAACTCTGTTACTTTATTCGGCATGTAATAGGCACTTTCTATTGTCTTTTCTATTTATTTTGAGATGGGAAAacttttattaagttgaacatttgctctttatgacagaatgttaaaatgtgAAATCAAAAGTAATTTTTTtcaaaaggcaccgaattggtggGATGGCCCATATACTGTAACAATCACTTATATAAACACCTCAGCCCAGAAGGTAGAGCTCAGAGAATCTACTTCCTTGTTGCTCTACGAATGGAGATTCATGGGATGCGCCGTCTGTCCAAAACCATTTCTGTGATTTAACATCATGGCTGTCTTTCTGACCGTGGTGAGGGTCTCTGGCACCCCACTGGGGACAGGCAGACATTCTCTCCACACAGCTGCTCCTCCCACTTCATCTCTCCTGCTGATCAGTCAGAGCCAGGAGGCCTCACACACTGTCTATAAATAacagagatgtactgtatgtaggtgTCGAAGCTTGTCTACGTGGGCAGAGGAAGgatgtgtttatgtgggtgtgtTGTCGCACAAGAGAGTGAATGTcaatatttgtttgtgtgtgacagaaagaacaagagagagatatagagagtaggagagagaggactcaGTACATAGCATCCTCGTACATGTCCGTCCGGAGGCAGAAGAGGATGCCTCCCCCTAGCATGAAGATGGTGCCCCCCCAGCCCAGTCCGTAGCCCCAGTTGAACTCATGGTAGGTCTGGAGGACAGTTCCATCAATGAACTTGATTGGGTAGAGGACCAGTGCACAGGCCTGAA

Function

NR:

description
transmembrane protein 47-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2484752 True 1783 lncRNA 0.39 2 30845854 30847706

Neighbor

gene id symbol gene type direction distance location
LOC110510022 LOC106563433 coding upstream 23001 30817845 ~ 30824144 (+)
il13ra2b il13ra2b coding upstream 41035 30786744 ~ 30804819 (+)
LOC110509412 LOC106563437 coding upstream 65036 30691961 ~ 30780818 (+)
LOC110510020 LOC106563438 coding upstream 176380 30652692 ~ 30669474 (+)
LOC110510009 LOC106563450 coding upstream 554651 30264990 ~ 30291203 (+)
LOC110510024 LOC106563431 coding downstream 73782 30921488 ~ 31017638 (+)
LOC110510025 LOC106563429 coding downstream 196361 31022733 ~ 31057809 (+)
her1 LOC106603184 coding downstream 370252 31217958 ~ 31218977 (+)
mepce LOC106563428 coding downstream 378631 31226337 ~ 31231531 (+)
LOC110509418 LOC106563427 coding downstream 389723 31237429 ~ 31443740 (+)
G2174000 NA non-coding upstream 103230 30742423 ~ 30742624 (+)
G2173913 NA non-coding upstream 254675 30575414 ~ 30591179 (+)
G2173886 NA non-coding upstream 307463 30537261 ~ 30538391 (+)
G2173882 LOC106563445 non-coding upstream 316233 30527141 ~ 30529621 (+)
G2173878 NA non-coding upstream 322225 30523412 ~ 30523629 (+)
G2174044 NA non-coding downstream 26100 30873806 ~ 30874737 (+)
G2174047 NA non-coding downstream 28879 30876585 ~ 30876847 (+)
G2174049 NA non-coding downstream 30552 30878258 ~ 30878523 (+)
G2174050 NA non-coding downstream 32404 30880110 ~ 30880807 (+)
G2174054 NA non-coding downstream 66058 30913764 ~ 30913996 (+)
G2173841 LOC106563447 other upstream 377730 30463942 ~ 30468124 (+)
G2173761 LOC106563448 other upstream 505163 30336852 ~ 30355090 (+)
G2173754 LOC106563449 other upstream 522239 30319648 ~ 30323615 (+)
G2173675 NA other upstream 708534 30136723 ~ 30137320 (+)
G2174785 NA other downstream 470131 31317837 ~ 31318377 (+)
G2175233 psmb6 other downstream 762838 31610544 ~ 31611469 (+)
LOC110509422 LOC106563560 other downstream 1053275 31820484 ~ 31908546 (+)
G2175413 NA other downstream 1189341 32037047 ~ 32037736 (+)
LOC110509425 LOC106563572 other downstream 1274064 32115629 ~ 32150579 (+)

Expression


Co-expression Network