mepce (LOC106563428)


Basic Information

Item Value
gene id mepce
gene name LOC106563428
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31226337 ~ 31231531 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591300.2
CTGGcaaaagataaaacaaacaaCGATTGGAACCTTCCAATCTGCGTGAGGTTGAGCTGTTGAGCTAGAAGTTAGCGATTGGAGTTTGGAGTGTACAGCGAGCTCATAATCGCACAGTTACCACCACACtgattgttttattatttttagaGAGGCTTGTTTTCCAAACATTATTGATTCATTTCACCAGTGAAAATAATATTATCGAACAATCAAGCTATCAACGAAGCTGATGCAGCAACGTCAGTAACTCGGGAGGGAGTGTGGCAGTGACAGTTCAGCTTCACGAGAAGGCGGGTAGAACGATCAGTTGTCCCATGTCAGCACCAAAACAATTGCGTGGAAGATGATAGAGATGTCTGTTGATAAAGAGACTGTTCCAACCAAAAGTATGAAAGTGGACCCAGTGCCACCCCAGAAACTCTCAGAACGCACTGGAAGCTGCAACAATGCCCCCAAAGTGCCAGAGGTCACCCTGGCCAACCCAGACAGCACTGATGGTGCTGCTACCTGCCCCATGCCAGACAGTGGTGCCCAAACCAAGCACAGCAGCACGGCTGACCCCCACGATCAGACAAAGCGTGTTGAGCAGGAGGCCATGTTGACTGAGCAGCATGTTAACCCTAAAAATGGCTTTCAGCAACCCAAACAACCACCGCAGCAGCAGAAACTCTCAAAGCGTCGCAGCACAATGATTGCAGGGTTCAAGCATCCAGCAGGTAAGAGACGACGACGGGTAAACTCAGAGAGCGACTCGGTTCTGCCCACCAACTTcctgctgggaggaaacatattTGACCCGCTGAACCTCAACAGCCTGCAGGACGAGGAGGTGAACAGGGCCCTGAACGCTGAGACGCCCAAGTCCTCCCCCCTTCCTGCCAAGAACCGCGACCCTGTGGAGATCCTCATTCCCAGGGATATCACTGACCCTCTCAACCTCAACAGCAGGATGGGAGGTAGGAGCCTCCTGGTGTCGCCCTTCAAGAGTGGTGGCAGGAGGAGACACCGTAACAGAcaccatggaggaggaggtgggggttCCACAGTCTCCGTGTTGGACCTGTCAGATTCAGAGAGGAGTGGTGAAGTCACCAACACCACTTCTTCTCTGTCTAACCTGGCATCTGCTAGTGCTGCGTCTACCTGTGTTCTAGAAGCACCCAGTGTCCCAGCCGTCCTGGACCCCCAGGATGCTAATGGTAATGAGATCAACCCATCCAACTGCAGGCATGAAGCCATGCTCACTGTATCTGCCCCCCAGGCCCAGCCTCGAGCCCAGGAAGACTCCTCAGCAGCCACCGCCGGAGGCCCAAACCATCTCTCTAGCCGGCAACGCAAACGCAGACGCAACTCTGGTAAAACAGAGCCTCCGATGGTCCAATCTACTCTTATGGCCCGGTCGGGGACGGAGGAGAGGGGCCGTGGAGCTGGGCCCGGGAGAAATGCGCAGTCCTCCTTCCACACCCCAGTGGTAGGTCCCAGGGGGTCCTCCCAGGTACCAGGGGGTCGGCAACCGCATCTTCACAACCAGCACAAACAACAGCACCAAGGCAACAAGAAGAAGTTCCAGTATGGGAACTACAACAAGTACTACGGCTACCGCAACCCAGGCTGTGCCGAGGACCCACGGTTCCGTTGTCTACGTCCGGAGTGGTTCCATGGTAAAGCAGTACTGGATCTGGGCTGTAACACGGGCCACCTGACTCTGTGTATTGCTAAGAAGTTGCGGCCCGCACGCATATTGGGTTTGGACATTGATGGGGGTCTGGTGCACGCGGCCCGCCAGAACATCAGACACTACCTGTCAGAGCTGCAGGCCCAGGAGGCCCGGCGAGCCGCAGGGGATGAGAAGGAGAAGACCAATGGaccaggagaggaaaggaaagagaaggCCAACAGACAGGAAGACGAGTCACACTCAGGAGGACTAACGCACAAACAGAATGAGAAAGAGCCCAGCAGGGCTGTAAATGGAAATGCTGaaaagcaagtccctgcagaggCAGCGGGTGGCGTGGTGTTGTCACGTCACGCAGAGAGAAGAGCTCAGGAGAGGGGGgctgaggagatggaggaggactcTGGAGCACCTGCTGTTGAACTGGGAACCAGCTCCTTCCCTGTCTCCTTATGGATCTCCAGGGGACCCATAGCAGCACCCCCACTCCCCGACACACCCACCATGCCTCCTGGTAACTTCCCCTCGAATGTCTCCTTTGTCAAGGGGAATTATGTCCTGGAGAGTGATGCTCTGCTGCTGACCCAGCAGCCAGAGTACGACGTCATCCTATGCTTCAGTGTTACCAAGTGGGTCCACCTGAACTGGGGAGACGGTGGCCTGAAGCGCCTCTTTCACAGAGTGTTCAGACACCTGCGTCCTGGAGGCCTGTTCGTCCTGGAGCCACAGCCCTGGGTCACCTACGGCAAGAGAAAGAAACTCACGGATAGCATCTTTAAGAATTACCACAGCATCCGCCTCAAACCAGAGCACTTCTCCACATACCTGACATCTGAAGTGGGATTCTCCAGCTACGAGTTGATCGGGACGCCTAACAGTTCATCAAGAGGTTTTCAGAGGCCAATCTATTTGTTTCATAAAGGAACATAATCTGCCAGGAAGTGGGATGGAGCAGGAGAAACCAAACCACCATGAGACACAAAACAAGCCACCCGCTCAAACATCTGCCTTCATCTCCAGTCTGTAAGCATATAGGTCAACCCCAATCAGAGCTTTCTACTTGTTTGTGATGCTGTGTTCAGAAGGTAGCTAAGGAGACCAAAACATGAGACTTGATTCTATAGAACGACTATCTGATGGCTTCTCTACACACAACTCCAGTCTAGATGATGAGAAGAAAAGCATTGGGACAGGGTGAACTCAATCATGACTCTTTGGGCTTGTTGCTCCCTATGCACAGACCATTGTTCCTTATCTTTTTATTACTGTTCGTACTCTTGTTCAGTCAAGGAttgtatttttttcacattttaatATCAACGTTCATCAATAGATCAACTTTTGAAGCAGAATGGACAACCAAGACCTAATTTGAATCCTTTGCATAAAATGTACTCCCATGTAATGTCCAAATAGAACTAATCTAGGGACATTTCTCACACTTTTTATAGGATCAGAGCATCTTCAATTTTAAGACTGTTCTGCTTAACATAAGTCCTCACTGACTGACCAGGAAAAGCATTTTGACTCTGGATAAGTGTGGCCTGTCTTCAGCCTGCTCCTGGCCCAGAGTGCTTTTTCTCTAGATATCTTACTGCCTGTCTGGGGACTGTTCCTGTCTTTTTCTATTGGTAGCTGATTCAAGAACTGTCAGTCAGGTGGCATTGGCTATGGTGAGATGTGAGGGATGatcaatgttttttctttggcTGGTTATAAGAATGATtgattgttattttatttgactcatgttcttttttctttcttttttcaatGGATTCTTCTTGTCATGTGTCCAAACAAAGGTTGGCTGCCAATTTCTCATATTCAACCTATACAGAGCCTCCATGGTTTGGACTTGTATTGTTAATCCAGCTCACTTTAACCCAAATCAGTTCATCGTAATGAAATGTTTATGCTTTACTCAATTCTTATGCTTAATATTTTGTTTAACTTGCACCAGGTGCTGGTTTAGTTCTGATTTtgttgaaatgtttttttgtttttaataaacaAATCAATTGAAATGCAGTCAGTGCTCATTAGTCATTCTACAGATGCCTCCAATCTAAAGGAAAAGACATCCACAGTCACTAAACAAATCGGATTCACAGCGTCAAACCCAAACCAATCTGTTCATCTCATCCTTCTCCATAAGATCCTAGACCTAGGGAAACGTTATAGGGAGGAAAATAGCTTGATGAAAAGAGAATGTCACTTCTATTCATTATTTTTCTGTTGATGTTGTGCAGATTTGTAACCACCTGTTTATGACTTTTATATAAAGTTTTAATCCGTTATacatttgtagaaatgtttgacTACCCTTGGAATGCCAGCGCTGATGTGTGTGATTGAATTATCACTAGTCATGTGAGTGCTTGATCAAAGGAAACTGCATGAGATTTGCTACAGATATGTTGCAACAACTCTTCTCAATCTGAATTTGCACTGATATGAGGGGCATTTACTATCAATAAATTGTCATTTATTCAAAGTC

Function

NR:

description
7SK snRNA methylphosphate capping enzyme-like

GO: NA

KEGG:

id description
K15190 MEPCE, BCDIN3; 7SK snRNA methylphosphate capping enzyme

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591300.2 True 4181 mRNA 0.48 5 31226337 31231531

Neighbor

gene id symbol gene type direction distance location
her1 LOC106603184 coding upstream 7360 31217958 ~ 31218977 (+)
LOC110510025 LOC106563429 coding upstream 168528 31022733 ~ 31057809 (+)
LOC110510024 LOC106563431 coding upstream 208699 30921488 ~ 31017638 (+)
LOC110510022 LOC106563433 coding upstream 403484 30817845 ~ 30824144 (+)
il13ra2b il13ra2b coding upstream 421518 30786744 ~ 30804819 (+)
LOC110509418 LOC106563427 coding downstream 5898 31237429 ~ 31443740 (+)
ephb4a LOC106603099 coding downstream 205526 31437057 ~ 31487116 (+)
LOC110510029 LOC106563422 coding downstream 391174 31622705 ~ 31640277 (+)
spag7 spag7 coding downstream 415042 31646573 ~ 31652210 (+)
chrdl2 LOC106563420 coding downstream 421946 31653477 ~ 31659720 (+)
G2174721 NA non-coding upstream 46598 31179434 ~ 31179739 (+)
G2174720 NA non-coding upstream 47268 31178758 ~ 31179069 (+)
G2174718 NA non-coding upstream 49921 31176039 ~ 31176416 (+)
G2174716 NA non-coding upstream 53340 31172747 ~ 31172997 (+)
G2174710 NA non-coding upstream 62587 31163529 ~ 31163750 (+)
G2174807 NA non-coding downstream 200255 31431786 ~ 31432186 (+)
G2174832 NA non-coding downstream 236672 31468203 ~ 31469075 (+)
G2174813 NA non-coding downstream 246614 31478145 ~ 31481315 (+)
G2175119 NA non-coding downstream 258176 31489707 ~ 31490074 (+)
G2175120 NA non-coding downstream 259383 31490914 ~ 31491155 (+)
G2173841 LOC106563447 other upstream 758213 30463942 ~ 30468124 (+)
G2173761 LOC106563448 other upstream 885646 30336852 ~ 30355090 (+)
G2173754 LOC106563449 other upstream 902722 30319648 ~ 30323615 (+)
G2173675 NA other upstream 1089017 30136723 ~ 30137320 (+)
G2174785 NA other downstream 86306 31317837 ~ 31318377 (+)
G2175233 psmb6 other downstream 379013 31610544 ~ 31611469 (+)
LOC110509422 LOC106563560 other downstream 669450 31820484 ~ 31908546 (+)
G2175413 NA other downstream 805516 32037047 ~ 32037736 (+)
LOC110509425 LOC106563572 other downstream 890239 32115629 ~ 32150579 (+)

Expression


Co-expression Network