ephb4a (LOC106603099)


Basic Information

Item Value
gene id ephb4a
gene name LOC106603099
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31437057 ~ 31487116 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036968062.1
GTCAGTGTGTGTTAGTGCTATTCGGCTCTGAATGTGTTGAAATATCCCTAGTGAGAGGTTACTGAGTGGACGGGGATAAGTGCATAACTTTTTGTTTCTAGTTTATTTTCTTGAGAGTGATTTCTCGTAAAAAAAATCTTTCAGCTCTGTGATTTGTACATCGTTCTACATCATTGGGAACAGCCTAAAGACAAGGGCAGAGACACGCAGTTGTTCCCGACCAGCTATCCACTTAATTTTTGGGGAGGAATTTACAGAAATATCAATACAATTTTGGATCTGGTCGTTTGTAAAGAAACAAACAGAACACAGCAGTAACATGATTTTCATTCATCTCGACAATTGAGTTTTTTTGCAAGTGCCTTGACTGCAGACATCGAATTGAGAGGAGATTTGGGAGAAGTCGTCGAGGGTTCATGGACAAAGAGTGGAACGAATACAGCCAATGATACGATAAGTTTTATCTACATGCGTCCCCCTTCTTGAATGTGACAGGGGGGACATGGGACAAGATCATAGGACAACTCCGCTATATAATTGTATAGCCACTATATGCAATATGTTCTAGTGCTATATAGCAACGTTTTTCTTAGTATGAAAGTTAATACTTTATTGACTATTCTAGATTAAAAAAAActggtgttttttttatttttatcgaCTTATTCCATGAGACATTGACTTCCCACCGTCAGTCAGTCAAAGCGAGGTTTTCCTTGTAATATTGTGACCACATtttttttcactccttccccAGTGAAACTGGTGTTTGAACTGTTGTCCGTGTCAGATGTGGTCAGTGTTGCGGCCAATGGGTACACGGCCCAGTTGACGGTGCCTGTAATTCACCAGTTTAACCTTTTTGACACACACAACCGAAGCAGTTCGTTTATATTACGGATATTCTGGATGCCATTATGGAGTTCATATCCAGTCGCATTGCCCCACTTTGGCTGGTCCTGCTGGAGTGTTTGCTTCTGTCGACAGCAGAGGAAGAGGTCCTGATGAACACTAAGACAGAAACGTCAGATCTCAGATGGACCGTCTACTCCCATGACAACCCTCAGTGGGAGGAGGTGAGTGGTCTGGACGAGGAGAACAATAGCGTGAGGACCTATCAGATCTGCCAGATGGATGGCGCCTCCAGCCATTGGCTGCGCAGCGGGCTGATCCAGCGTCGGGGAGCGTCCCAGGTGTACGTGGAGCTGCGCTTCACCATGATCGAGTGTTCATCCAGAGTCACACACCACCGCAGCTGCAAGGAGACCTTCAACCTCTTCTACTACCAGGCCGACTCTGACGAGGCTACACCCACTCACCCATCCTGGATGGAGAACCCCTATATTAAGGTGGACACAGTGGCTGCAGACTTCCTGCTGAGGAAGGGCGGGGAGCGTAAGTTCAATGTGAAGACGCTGCGGCTGGGGCCTCTGTCTAAGAGGGGCTTCTACCTGGCCTTCCAGGCCCAGGGAGCCTGCATGGCCCTGCTGTCTGCCAGGGTGTTCTTCAAGAAGTGTCCCGCCCTAGCCAGCTCCCTGTCCTCCTTCCCTGAGACTGTGCCCCGTACCCTGGTGCAGGAGGCCCAGGGGGTGTGTGTGGACAACGCTGCCCAGCAGGGGCCCCGGCCACGGCCACCTAAACTCTTTTGTGGAGAGGACGGCCAATGGGTGGGCCAGCCCACTACCTCCTGTGGCTGTCTGCCCGGGTACGAGCCAGCCGACGGACACACCCGTTGCTCAGcTTGTTCTGTGGGTCAGTTTAGGTCTGGCTCGGGGGGCCAGTGCCAGGCTtgtccagggttcagccatgcTGTGGTGACAGGCTCTCCTGTGTGTCAGTGTCGTCCAGGATACCTCCGCGCTGACTCTGACACTCCAGACACCCCATGTACCAGACCCCCCTCTGCCCCACGCAGCATCGTGACCCAGATCAACGACACCACGGTGACTCTAGAGTGGAGCGAGCCCATGGACAGCGGCGGCAGGACTGATCTGAGCTACTCTGTGGAGTGTTCCCTGTGTGGGTCCCCTAGGGGTCCGTGCTCACCCTGCGGGGACAGTGTCAGCTACAGACCCTCTCAGCGAGGCCTGCTGGGCCGCAGGGTGGTGGTCTGGGGCCTCATGCCTCACACCACATACACCTTCTCTATCCAGGCCCTCAACGGGGTCTCCACTTCCAATGGCAAGGGGGCACCCAGCGATAGAGTTAACATCACCACCAGTCacgaggTTCCAGTGCTGCTGTCTGTGATCAGGAAGAGTATTTCTACAGAGAGCAGTCTGACTCTCCACTGGTCCGTTCCAGCCCAGCCCCACTACACCATCCTGCAGTACCAGCTACGTTACTGTGAGACGGAGCGTCGAGGTGAGGAGCAGTTGTGTAGCTACAGGGAGAGTGACAGTAACCAGGTGGTGCTGAGTGATCTCCGCAGGGCCACTCAGTATGAGGTGCAGGTTCGGGCCCGCACCATGGCTGGCTACGGCAGCTTCAGCCCAGCCGCCTCCTTCAGAACACTGCCTGACGGGGATGACTCTCCTAACCAGCTTCTGATGACCGGTGTCCTTATCGCCATGGGGATGCTTCTGCTCATCACTGTCGTCACTGTGGCTGTTTTCTGCATACGCAGACACAGTAGAATGAAGGACCCAGAGCTGAGTGACAAACATGGACAGTACCTCCTGGGCCaaggagTCAAGGTCTATATTGACCCCTTTACCTACGAGGACCCTAACGAAGCCGTACGGGAGTTTGCCAAGGAGATCGATGTTTCCTTTGTCAAGATCGAGGAGGTCATTGGTGCCGGGGAGTTTGGGGAGGTGTGTCGGGGGAGGCTGAAGGTCCCAGGGAAGAAGGAGAACTACGTGGCCATCAAGACCCTGAAGAGTGGCTACACGGACAAACAGAGGCGGGACTTCCTGTCGGAGGCTAGCATCATGGGCCAGTTCCAGCACCCCAACATCATCCACCTGGAAGGCATCATCACTGCCTCCTGTCCCGTCATGATCCTCACTGAGTTCATGGAGAACGGAGCGCTTGACTCCTTCCTTAGGttgaACGATGGTCAGTTCACTCCCATCCAATTGGTGGGCATGCTGCGTGGCATCGCGTCGGGCATGAAGTACCTGTCTGAGATGAGCTACGTCCACAGAGACCTGGCCGCCCGCAACATCCTGGTCAACAGCAACCTGGTGTGTAAGGTGTCTGACTTCGGCCTGTCCCGTTTCCTCCAGGAGAACTCCTCAGACCCCACCTACACCAGCTCTCTGGGTGGTAAGATCCCTATCCGCTGGACCGCCCCAGAGGCCATCGCCTTCAGGAAGTTCACCTCAGCCTCCGACGCCTGGAGCTACGGCATCGTCATGTGGGAGGTCATGTCGTTCGGAGAGAGGCCCTACTGGGACATGAGCAACCAGGACGTGATCAACGCCATCGAGCAGGACTACCGCCTACCCCCGCCCCCTGACTGCCCCACACACCTCCACCAGCTGATGCTGGACTGCTGGCAGAAGGAGCGCTCGGCCCGCCCTCGCTTTGCCGCCATCGTTAGTGCCCTGGACAAGCTGATCCGCAACCCTGCCTCGCTCAAGATCATGGCCCAGGATGGTGCAGGGCCATCCCACCCCCTGCTGGACCAGCGGGCCCCCCCGGCCCCCTCAGCGTGTGGCTCCGTGGGGGAGTGGCTGAGGGCCATCAAGATGGAGCGCTACGAGGACAGCTTCCTCCAGGCTGGATTCACCTCTGTAGACCTGTTGGCCCAGATCACTGCTGAGGACCTGCTGCGTCTGGGAGTGATCCTGGCTGGACACCAGAGGAAGATCCTGTCCAGCATCCAGACTCTGACCATGACCAAGAGCCCTGGAACCATACGCTTCTAACCCCAGCACAACTCaacttgacccctgacctcttgCCCTGACCCAACACAGACACCagcacgcacacaccacacagaacATCGCACACCCATGGACCTATCCAGCACCCTGTGGTGCTGCACCCACGCAGTTCCTCACCCTGGTACCAGTCCCTTCTTAGACATGAAGTCCATCAGTGTCGTGACAGAACCTCAATACGAATTTATTATAGACAACCTTCCCTCCAACCTGTTCAACCTGTCCTTATTGACCACTGAGCGGTCAGTCAGGCCTGGTGCTGGGGTCTGGTGGGAGACTGCCTCACTGGCCAGTTCACCCTCACTTCTCCTCCTCTGCTTCACTGCTTGAATGTTTACCTGTGGTCCTGAACACACTGGTGATACTAGTGGAAGCACAGATCAACGTCAACCTAAGGACTATAGCTTTTCTATTGGTGTATTTCATGATGAAGAATATGAACTAGCCAGTAGCGGACGACGCTACTGCAACATGGTGACACTTTCACAAATGTTGTGTCTTGGATTATTCATCCATGTGGATTATATGATGATGTGATTACAGCTCTTTCAGCGGACTGGAAAATGTGTGTTTGGACTCTTACCGGATGGGCCTCACGTTTTCTTTTGGTTTCAAAATGCCTTgcctttcctcaggtgttatggTTAATGTAGGCATTTAGACCAGAACAGACTGTAGTCATACAagccttcctctcctcatcttcctcagTGACTGTGCATGACTCTCCTGGGTCAGCTGTGTGGGAAGAGAGCAGGACTGAGATCAGCACTTTATAGGCTGAACAGAGAAGTTGGGTTTTTTAGTCAGAGATAGAGATCTCTCTGTCTGACTACACCTCTGCTCCTCTCAGAAGCTGCAGTACTTCCTGTGTTTGTCTTGGGGTATGGCTGGCTGGGCATTTCCACCTCCTGTTGCTGCTGGACTGGGCAGCACACTTCCACACACTCAGACTGAAGGAGGTCCCTGACCGTGGTTAACGAGACTAAGAGAACACTGCTTAAGTATTTTCTAATTGGACGACTTGACCTGGACAGACATCAGCCTGGCCTCTCATTACTTGATTGATATTACTGTTGGTGTGTTTCCGTCTTGCTCGAGTGCCATTTGATATTCTATGTGATTTGAAATCAAAATGCCTTTTCTATAAAGCGGAAAGCCCTCCCAGGGTGATACAGTTAGATCTACCATACAAAGTCCCTTCAGATGCCAACAGTTTCACATGTTTATGTTTGGGGAGATTGTGTGCTTCCTTGTTAACTAAAGGATTGTGGGTAAGTGGTCTTCACATTGAGGATCTGTTATGAAAACAGGGACCTATCTTTTATAAAGTTGCCTTTTAAAATATTGTGTAGATAAGTATGTTTTGATTCCCCCTCCTttctgtgtgtaatgtgtattcaGTCACAATAAAGACACACACCAGTGTTTATCA

Function

NR:

description
ephrin type-B receptor 4 isoform X1

GO:

id name namespace
GO:0018108 peptidyl-tyrosine phosphorylation biological_process
GO:0048013 ephrin receptor signaling pathway biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0005003 ephrin receptor activity molecular_function

KEGG:

id description
K05113 EPHB4, HTK; Eph receptor B4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036968062.1 True 5328 mRNA 0.52 16 31437057 31487116

Neighbor

gene id symbol gene type direction distance location
mepce LOC106563428 coding upstream 205526 31226337 ~ 31231531 (+)
her1 LOC106603184 coding upstream 218080 31217958 ~ 31218977 (+)
LOC110510025 LOC106563429 coding upstream 379248 31022733 ~ 31057809 (+)
LOC110510024 LOC106563431 coding upstream 419419 30921488 ~ 31017638 (+)
LOC110510022 LOC106563433 coding upstream 614204 30817845 ~ 30824144 (+)
LOC110510029 LOC106563422 coding downstream 135589 31622705 ~ 31640277 (+)
spag7 spag7 coding downstream 159457 31646573 ~ 31652210 (+)
chrdl2 LOC106563420 coding downstream 166361 31653477 ~ 31659720 (+)
neu3.1 neu3 coding downstream 191955 31679071 ~ 31682119 (+)
st14b LOC106563416 coding downstream 203030 31690146 ~ 31701571 (+)
G2174807 NA non-coding upstream 4871 31431786 ~ 31432186 (+)
G2174721 NA non-coding upstream 257318 31179434 ~ 31179739 (+)
G2174720 NA non-coding upstream 257988 31178758 ~ 31179069 (+)
G2174718 NA non-coding upstream 260641 31176039 ~ 31176416 (+)
G2174716 NA non-coding upstream 264060 31172747 ~ 31172997 (+)
G2175119 NA non-coding downstream 2591 31489707 ~ 31490074 (+)
G2175120 NA non-coding downstream 3798 31490914 ~ 31491155 (+)
G2175127 NA non-coding downstream 24509 31511625 ~ 31512044 (+)
G2175128 NA non-coding downstream 24958 31512074 ~ 31512403 (+)
G2175147 NA non-coding downstream 49208 31536324 ~ 31536555 (+)
G2174785 NA other upstream 118680 31317837 ~ 31318377 (+)
G2173841 LOC106563447 other upstream 968933 30463942 ~ 30468124 (+)
G2173761 LOC106563448 other upstream 1096366 30336852 ~ 30355090 (+)
G2173754 LOC106563449 other upstream 1113442 30319648 ~ 30323615 (+)
G2175233 psmb6 other downstream 123428 31610544 ~ 31611469 (+)
LOC110509422 LOC106563560 other downstream 413865 31820484 ~ 31908546 (+)
G2175413 NA other downstream 549931 32037047 ~ 32037736 (+)
LOC110509425 LOC106563572 other downstream 634654 32115629 ~ 32150579 (+)
cxxc5a LOC106563628 other downstream 1735701 33212994 ~ 33235535 (+)

Expression


Co-expression Network