LOC110510029 (LOC106563422)


Basic Information

Item Value
gene id LOC110510029
gene name LOC106563422
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048593.1
NCBI id CM023247.2
chromosome length 47748341
location 31622705 ~ 31640277 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021591304.2
TGATTAACACGTTGGGACCCGCTGCAAGGAGAACCAGGGATTGGAATGATACTTCTGAAGAGAATTGCCACCATCATCAGCATCTCAAATGAAACAGATGGGACACAGGGTAACTGTGGCATCGATTTATGCATTTGATTAAATGATCACATTTTTGCCGATCATGCCAACTATGCTGTGAAATGGTTACTGTGTGCCAGGATCCTTTTCGATTGGGGAAATGTATAGCCTGACTGATATCCGAAATAGATTATTATAGCAGTTATGCTATTGACAATATTCAACAAAGTGGATAAAAATTACCACACGATTTGGAGCTGCTGATGCTGCCTTTTGCATCAGTTCGATGTTGCATGAGTTTGGGCACTGTGCCAGATAGGGGAAATACACTGGATGTGTGCATTAGAAGACTATGGTGTTTTAGCGCGTGTTGAATTCTGTTAGCATATACATTTATGGGAATATGAGAAAACATGTCTGAAGCTCATCTACAGTGTGGTTGTTGCGAAGCACTCCAGGGCTCAAGCTGGGCTCGACACTGATAGACTAACCTACGTTTGTAGCTGAAGAGGAGACAAGCAAGCTGATTAATGCTTTACCACCCTGCCTATCAATCAAGCTGTATCAAAAACATATAGCAAGCGTCTTCCTCGCCACCACGATCTTTCCGGATGTCTCTGCaagactaggcaagtcagtcaagtgAGGAATCTGTTGCGCTCGCCGTCCGTGGAGAGCGCGGTTCGAGAGGTAGCCTACCCGAGCCCGTGGAGCTGCGCCCCTTGATCAGCCTACGAGGACGACACTATGTACCAGCTCCCCGCTGATGATGATGGGAGGAATCAATGTTCACACTAGAAACCTCTTGAGACTAAGCGAACTCTGAGGAGCTCTGCCTGGACTGCAacaggaccagacaggagagaagagactGAGACAGACCAGACGCTGACTGCATGCGCCAGGTTGGGCCTGGGTTCTTGCCTGCTCCTGTGGCTCTGGACAGATAAGACAAACCTTCCCTGTTTGGGCATTTGTCTGGACAGGTACATCTTAGCTCTATCCCATCTACACTCTACCAAAGCAACTTTAAGTTGTAGCATCAATTTAGCAGACATTAGTATTTTGGGGTCTGACCCTAAGCCGCATCCCAAAGAGCCTCTCCAGGGGCCAGTTTTGTTTACCAGACTAGGCAGTGGTCACCATGCAGGTCTCTTTTGCCTGCACGGAGCACAATCTGAAGAGCCGCAGTGAGGACCGGCTTTGTGGTCTTCGCACTGCGCCCCCCCCTGGGGGAAGCAGtgggggaggtggtggagggagcAGCCAAGGGGGTAATGGCAACTACAACACCCAGGGCTCAGCCAAGTCCAGGGAGCAGTCAGGGTCCCGCCCGGTCCCCCAGGGCCATGCCCACATGAAGGAGGCAATAGGGCGCCACAGCAGTATGAAATACAGGAACCTGGGGAAGTCTGGTCTGCGTGTGTCCTGCTTAGGGCTGGGCACCTGGGTGACATTTGGATCACAGATATCTGACGAGATGGCTGAGAACTTGATGACCATTGCCTATGAGGCCGGGGTGAACCTCTTTGACACAGCAGAGGTGTATGCCTCCGGCAGGGCTGAAATCACCCTAGGGAACATCGTCAAGAAGAAAAGATGGAGGCGTTCTAGTTATGTTGTGACAACCAAGATCTATTGGGGAGGGCAggcagagacagaaaggggaCTCTCCAGAAAGCACATCATTGAAGGTTTGAGAGGATCCCTGTCCAGACTCCAGTTAGATTATGTGGACATTGTCTTTGCCAACCGGAATGATGTCAACAGCCCTATGGAAGAGATTGTCCGGGCCATGACCTTTGTAATAAATCAGGGCATGGCAATGTACTGGGGCACCTCTCGCTGGAGTGCCATGGAGATCATGGAGGCGTACTCAGTGGCGCGTCAGTTCAACCTGATCCCACCTGTATGTGAGCAGGCTGAGTATCACTACTTCCAGAGGGACAAGGTGGAGGTGCAGCTCCCTGAACTCTACCACAAGATTGGTCAGTCATCCACACTCACACAGCCCAGCGAACAGCACCGGATGTCCTCTCaacaggatctctctctctccctctcttgtctaGGTGTAGGGGCAATGACCTGGTCCCCCCTTGCATGTGGACTGATCACAGGGAAGTACAGTGAGGGTGTACCTGACATCTCCAGGGCTAATATGAAAGGTTACCAGTGGCTGAAGGAGCGTGTCAACAGTGAGGAGGGACGCAACCAGCTGGCCAAGATTAAAGAGCTCCACCTAATGGCCGACAGACTGGGCTGCACCGCCGCACAGCTAGCCATCgCCTGGTGTCTGCGCAGTGAGGGAGTGAGCTCAGTGCTGATGGGTGTCTCCAACACTGACCAGCTGGTGGAAAACCTGGGTGCCCTTAGGCTTATTTCACAGATGACTCCTCAGACCGTGGCTGAGATTGACTCACTTTTGGGAAACAAGCCCCACTCTAAGAAAGAGTCGCGAGCATGAAGAGGAAACGATGGAGCCAAAGACAATCAGAGAAAGATGAAGAACAGCCGAGGAACATCGCTCTTTCACCATCCAGTATAATCAAAAACGTGCATGTCCTCAGTAACATTTTGCTTCAAGAATTTGCGCATATCCATTTTGCGCATTGCATTGTACCACGTATGAAAAAAGGAAATATTTGAACGTGCAAAAACaaagattataaactgggtggtttgaaccCTGAATGCGGATtgtctgaaagccgtggtatatcagaccgtatacatcaggtatgacaaaacgtttatttttactgctctaattatgttggttaccagtttataatagcagtaaggcacctcgggggtttgggGTATATGGCAAATACACCACGGCTAAGAGCTGTGTCCAGGCAATCCgtgttgcgttgtgcataagaacagcccatagcaatggtatattggccatataccacaccccctctgtgccttattgcttaattagatCATATATATTACAGATCCCTCACTGACTGATCATGTCCACAAACAGAGGGTGAGGCCAAAGCATGGAGCATTAGGTTTCTGTCTTCCAGAGAGACCAATGAGGGCAAagttggagatggagagagatggtggtTGAATGAAGGAGGTGTTGCACTCTACTTTATCAAACATGATGGTGTTATCAATGAAAGGAGAACTCTTTGATGCCACGAAGCAACATGAGGCTCAGCTCTCTCACTGAATGTGTGACCAGCTCTACCATAGGACACTCTTTCTCTGCAGCTGCCTCTGAGTCCGCAGAATGCCTAGTACCCAGCAGAAAGCCAAAGGTTAGCATCACCTCGTCATCTCCGTATGTGACTGGCCTGTCACTCTATGTCCTTTAACAGCAGTTTCTTCCTTTTTATCTTCTCTGTGTGTAAACTGTGCACATGTCCCTTTAAGAGAGACCAGCCCAAGCAGGGTGTAAATGTGGCATGGCTTTAGTTATTTGGGCAGATTTGCAGTGCCCCTGTAAGCAGTCTTTTTGCACTAGCAGGTGGGATGGGCTGATCCAGGCTCTGCACTGGCAGGCACATCGTGGAGCTACGCTTTATTCACTGTTTGCAGCCCGCTGACATGGTCTGTGTCCATGTGATGTGTATTGTCCTCCAAATCAAACCATTTCTGCGTCAATGACAATTAAAACCAAGGCTTTCCCTG
>XM_021591306.2
GATTAACACGTTGGGACCCGCTGCAAGGAGAACCAGGGATTGGAATGATACTTCTGAAGAGAATTGCCACCATCATCAGCATCTCAAATGAAACAGATGGGACACAGGGTAACTGTGGCATCGATTTATGCATTTGATTAAATGATCACATTTTTGCCGATCATGCCAACTATGCTGTGAAATGGTTACTGTGTGCCAGGATCCTTTTCGATTGGGGAAATGTATAGCCTGACTGATATCCGAAATAGATTATTATAGCAGTTATGCTATTGACAATATTCAACAAAGTGGATAAAAATTACCACACGATTTGGAGCTGCTGATGCTGCCTTTTGCATCAGTTCGATGTTGCATGAGTTTGGGCACTGTGCCAGATAGGGGAAATACACTGGATGTGTGCATTAGAAGACTATGGTGTTTTAGCGCGTGTTGAATTCTGTTAGCATATACATTTATGGGAATATGAGAAAACATGTCTGAAGCTCATCTACAGTGTGGTTGTTGCGAAGCACTCCAGGGCTCAAGCTGGGCTCGACACTGATAGACTAACCTACGTTTGTAGCTGAAGAGGAGACAAGCAAGCTGATTAATGCTTTACCACCCTGCCTATCAATCAAGCTGTATCAAAAACATATAGCAAGCGTCTTCCTCGCCACCACGATCTTTCCGGATGTCTCTGCaagactaggcaagtcagtcaagtgAGGAATCTGTTGCGCTCGCCGTCCGTGGAGAGCGCGGTTCGAGAGGTAGCCTACCCGAGCCCGTGGAGCTGCGCCCCTTGATCAGCCTACGAGGACGACACTATGTACCAGCTCCCCGCTGATGATGATGGGAGGAATCAATGTTCACACTAGAAACCTCTTGAGACTAAGCGAACTCTGAGGAGCTCTGCCTGGACTGCAacaggaccagacaggagagaagagactGAGACAGACCAGACGCTGACTGCATGCGCCAGGTTGGGCCTGGGTTCTTGCCTGCTCCTGTGGCTCTGGACAGATAAGACAAACCTTCCCTGTTTGGGCATTTGTCTGGACAGGTACATCTTAGCTCTATCCCATCTACACTCTACCAAAGCAACTTTAAGTTGTAGCATCAATTTAGCAGACATTAGTATTTTGGGGTCTGACCCTAAGCCGCATCCCAAAGAGCCTCTCCAGGGGCCAGTTTTGTTTACCAGACTAGGCAGTGGTCACCATGCAGGTCTCTTTTGCCTGCACGGAGCACAATCTGAAGAGCCGCAGTGAGGACCGGCTTTGTGGTCTTCGCACTGCGCCCCCCCCTGGGGGAAGCAGtgggggaggtggtggagggagcAGCCAAGGGGGTAATGGCAACTACAACACCCAGGGCTCAGCCAAGTCCAGGGAGCAGTCAGGGTCCCGCCCGGTCCCCCAGGGCCATGCCCACATGAAGGAGGCAATAGGGCGCCACAGCAGTATGAAATACAGGAACCTGGGGAAGTCTGGTCTGCGTGTGTCCTGCTTAGGGCTGGGCACCTGGGTGACATTTGGATCACAGATATCTGACGAGATGGCTGAGAACTTGATGACCATTGCCTATGAGGCCGGGGTGAACCTCTTTGACACAGCAGAGGTGTATGCCTCCGGCAGGGCTGAAATCACCCTAGGGAACATCGTCAAGAAGAAAAGATGGAGGCGTTCTAGTTATGTTGTGACAACCAAGATCTATTGGGGAGGGCAggcagagacagaaaggggaCTCTCCAGAAAGCACATCATTGAAGGTTTGAGAGGATCCCTGTCCAGACTCCAGTTAGATTATGTGGACATTGTCTTTGCCAACCGGAATGATGTCAACAGCCCTATGGAAGAGATTGTCCGGGCCATGACCTTTGTAATAAATCAGGGCATGGCAATGTACTGGGGCACCTCTCGCTGGAGTGCCATGGAGATCATGGAGGCGTACTCAGTGGCGCGTCAGTTCAACCTGATCCCACCTGTATGTGAGCAGGCTGAGTATCACTACTTCCAGAGGGACAAGGTGGAGGTGCAGCTCCCTGAACTCTACCACAAGATTGGTGTAGGGGCAATGACCTGGTCCCCCCTTGCATGTGGACTGATCACAGGGAAGTACAGTGAGGGTGTACCTGACATCTCCAGGGCTAATATGAAAGGTTACCAGTGGCTGAAGGAGCGTGTCAACAGTGAGGAGGGACGCAACCAGCTGGCCAAGATTAAAGAGCTCCACCTAATGGCCGACAGACTGGGCTGCACCGCCGCACAGCTAGCCATCgCCTGGTGTCTGCGCAGTGAGGGAGTGAGCTCAGTGCTGATGGGTGTCTCCAACACTGACCAGCTGGTGGAAAACCTGGGTGCCCTTAGGCTTATTTCACAGATGACTCCTCAGACCGTGGCTGAGATTGACTCACTTTTGGGAAACAAGCCCCACTCTAAGAAAGAGTCGCGAGCATGAAGAGGAAACGATGGAGCCAAAGACAATCAGAGAAAGATGAAGAACAGCCGAGGAACATCGCTCTTTCACCATCCAGTATAATCAAAAACGTGCATGTCCTCAGTAACATTTTGCTTCAAGAATTTGCGCATATCCATTTTGCGCATTGCATTGTACCACGTATGAAAAAAGGAAATATTTGAACGTGCAAAAACaaagattataaactgggtggtttgaaccCTGAATGCGGATtgtctgaaagccgtggtatatcagaccgtatacatcaggtatgacaaaacgtttatttttactgctctaattatgttggttaccagtttataatagcagtaaggcacctcgggggtttgggGTATATGGCAAATACACCACGGCTAAGAGCTGTGTCCAGGCAATCCgtgttgcgttgtgcataagaacagcccatagcaatggtatattggccatataccacaccccctctgtgccttattgcttaattagatCATATATATTACAGATCCCTCACTGACTGATCATGTCCACAAACAGAGGGTGAGGCCAAAGCATGGAGCATTAGGTTTCTGTCTTCCAGAGAGACCAATGAGGGCAAagttggagatggagagagatggtggtTGAATGAAGGAGGTGTTGCACTCTACTTTATCAAACATGATGGTGTTATCAATGAAAGGAGAACTCTTTGATGCCACGAAGCAACATGAGGCTCAGCTCTCTCACTGAATGTGTGACCAGCTCTACCATAGGACACTCTTTCTCTGCAGCTGCCTCTGAGTCCGCAGAATGCCTAGTACCCAGCAGAAAGCCAAAGGTTAGCATCACCTCGTCATCTCCGTATGTGACTGGCCTGTCACTCTATGTCCTTTAACAGCAGTTTCTTCCTTTTTATCTTCTCTGTGTGTAAACTGTGCACATGTCCCTTTAAGAGAGACCAGCCCAAGCAGGGTGTAAATGTGGCATGGCTTTAGTTATTTGGGCAGATTTGCAGTGCCCCTGTAAGCAGTCTTTTTGCACTAGCAGGTGGGATGGGCTGATCCAGGCTCTGCACTGGCAGGCACATCGTGGAGCTACGCTTTATTCACTGTTTGCAGCCCGCTGACATGGTCTGTGTCCATGTGATGTGTATTGTCCTCCAAATCAAACCATTTCTGCGTCAATGACAATTAAAACCAAGGCTTTCCCTG

Function

NR:

description
voltage-gated potassium channel subunit beta-3-like isoform X3

GO: NA

KEGG:

id description
K04884 KCNAB3; potassium voltage-gated channel Shaker-related subfamily A, beta member 3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021591304.2 False 3717 mRNA 0.49 13 31622705 31640277
XM_021591306.2 True 3632 mRNA 0.49 14 31622706 31640277

Neighbor

gene id symbol gene type direction distance location
ephb4a LOC106603099 coding upstream 135589 31437057 ~ 31487116 (+)
LOC110509418 LOC106563427 coding upstream 178965 31237429 ~ 31443740 (+)
mepce LOC106563428 coding upstream 391174 31226337 ~ 31231531 (+)
her1 LOC106603184 coding upstream 403728 31217958 ~ 31218977 (+)
LOC110510025 LOC106563429 coding upstream 564896 31022733 ~ 31057809 (+)
spag7 spag7 coding downstream 6296 31646573 ~ 31652210 (+)
chrdl2 LOC106563420 coding downstream 13200 31653477 ~ 31659720 (+)
neu3.1 neu3 coding downstream 38794 31679071 ~ 31682119 (+)
st14b LOC106563416 coding downstream 49869 31690146 ~ 31701571 (+)
LOC110509421 LOC106563415 coding downstream 61421 31701698 ~ 31723025 (+)
G2175213 NA non-coding upstream 30532 31584796 ~ 31592173 (+)
G2175183 NA non-coding upstream 55373 31566955 ~ 31567332 (+)
G2175166 NA non-coding upstream 65819 31556636 ~ 31556886 (+)
G2175165 NA non-coding upstream 66372 31556019 ~ 31556333 (+)
G2175149 NA non-coding upstream 84898 31537301 ~ 31537807 (+)
G2175240 NA non-coding downstream 1327 31641604 ~ 31644962 (+)
G2175264 NA non-coding downstream 29024 31669301 ~ 31669946 (+)
G2175265 NA non-coding downstream 31238 31671515 ~ 31671824 (+)
G2175281 NA non-coding downstream 67788 31708065 ~ 31708276 (+)
G2175282 NA non-coding downstream 68256 31708533 ~ 31708759 (+)
G2175233 psmb6 other upstream 11236 31610544 ~ 31611469 (+)
G2174785 NA other upstream 304328 31317837 ~ 31318377 (+)
LOC110510022 LOC106563433 other upstream 798561 30817845 ~ 30824144 (+)
G2173841 LOC106563447 other upstream 1154581 30463942 ~ 30468124 (+)
G2173761 LOC106563448 other upstream 1282014 30336852 ~ 30355090 (+)
LOC110509422 LOC106563560 other downstream 260704 31820484 ~ 31908546 (+)
G2175413 NA other downstream 396770 32037047 ~ 32037736 (+)
LOC110509425 LOC106563572 other downstream 481493 32115629 ~ 32150579 (+)
cxxc5a LOC106563628 other downstream 1582540 33212994 ~ 33235535 (+)
LOC110510125 LOC106563697 other downstream 2490734 34105921 ~ 34135553 (+)

Expression


Co-expression Network